GDCM: MPRViewer.java

GDCM 3.2.11

MPRViewer.java
/*=========================================================================
Program: GDCM (Grassroots DICOM). A DICOM library
Copyright (c) 2006-2011 Mathieu Malaterre
All rights reserved.
See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
import vtk.*;
import gdcm.*;
import java.io.File;
/*
* Compilation:
* CLASSPATH=vtkgdcm.jar:/usr/share/java/vtk.jar javac MPRViewer.java
*
* Usage:
* LD_LIBRARY_PATH=/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/xawt:/usr/lib/jni:. CLASSPATH=/usr/share/java/vtk.jar:vtkgdcm.jar:gdcm.jar:. java MPRViewer BRAINX
*
*/
public class MPRViewer
{
static {
// VTK
System.loadLibrary("vtkCommonJava");
System.loadLibrary("vtkFilteringJava");
System.loadLibrary("vtkIOJava");
System.loadLibrary("vtkImagingJava");
System.loadLibrary("vtkGraphicsJava");
System.loadLibrary("vtkRenderingJava");
// VTK-GDCM
System.loadLibrary("vtkgdcmJava");
}
static FilenamesType fns = new FilenamesType();
public static void process(String path)
{
fns.add( path );
}
// Process only files under dir
public static void visitAllFiles(File dir)
{
if (dir.isDirectory())
{
String[] children = dir.list();
for (int i=0; i<children.length; i++)
{
visitAllFiles(new File(dir, children[i]));
}
}
else
{
process(dir.getPath());
}
}
public static void main(String[] args) throws Exception
{
String dirname = args[0];
if( !PosixEmulation.FileIsDirectory( dirname ) )
{
return;
}
File dir = new File(dirname);
visitAllFiles(dir);
IPPSorter ipp = new IPPSorter();
ipp.SetComputeZSpacing( true );
ipp.SetZSpacingTolerance( 1e-3 );
boolean b = ipp.Sort( fns );
if(!b)
{
throw new Exception("Could not scan");
}
double ippzspacing = ipp.GetZSpacing();
FilenamesType sorted = ipp.GetFilenames();
vtkStringArray files = new vtkStringArray();
long nfiles = sorted.size();
//for( String f : sorted )
for (int i = 0; i < nfiles; i++) {
String f = sorted.get(i);
files.InsertNextValue( f );
}
vtkGDCMImageReader reader = new vtkGDCMImageReader();
reader. SetFileNames( files );
reader.Update(); // get spacing value
double[] spacing = reader.GetOutput().GetSpacing();
vtkImageChangeInformation change = new vtkImageChangeInformation();
change.SetInputConnection( reader.GetOutputPort() );
change.SetOutputSpacing( spacing[0], spacing[1], ippzspacing );
// A simple vtkInteractorStyleImage example for
// 3D image viewing with the vtkImageResliceMapper.
//
// Drag Left mouse button to window/level
// Shift-Left drag to rotate (oblique slice)
// Shift-Middle drag to slice through image
// OR Ctrl-Right drag to slice through image
// Create the RenderWindow, Renderer
vtkRenderer ren1 = new vtkRenderer();
vtkRenderWindow renWin = new vtkRenderWindow();
renWin.AddRenderer(ren1);
vtkImageResliceMapper im = new vtkImageResliceMapper();
im.SetInputConnection(change.GetOutputPort());
im.SliceFacesCameraOn();
im.SliceAtFocalPointOn();
im.BorderOff();
vtkImageProperty ip = new vtkImageProperty();
ip.SetColorWindow(2000);
ip.SetColorLevel(1000);
ip.SetAmbient(0.0);
ip.SetDiffuse(1.0);
ip.SetOpacity(1.0);
ip.SetInterpolationTypeToLinear();
vtkImageSlice ia = new vtkImageSlice();
ia.SetMapper(im);
ia.SetProperty(ip);
ren1.AddViewProp(ia);
ren1.SetBackground(0.1,0.2,0.4);
renWin.SetSize(300,300);
vtkRenderWindowInteractor iren = new vtkRenderWindowInteractor();
vtkInteractorStyleImage style = new vtkInteractorStyleImage();
style.SetInteractionModeToImage3D();
iren.SetInteractorStyle(style);
renWin.SetInteractor(iren);
// render the image
renWin.Render();
vtkCamera cam1 = ren1.GetActiveCamera();
cam1.ParallelProjectionOn();
ren1.ResetCameraClippingRange();
renWin.Render();
iren.Start();
}
}
gdcm::File
a DICOM File
Definition gdcmFile.h:34
vtkGDCMImageReader
Definition vtkGDCMImageReader.h:105
vtkGDCMImageReader::SetFileNames
virtual void SetFileNames(vtkStringArray *)
vtkGDCMImageReader::vtkGDCMImageReader
vtkGDCMImageReader()
gdcm
Definition gdcmASN1.h:21