NAME
gt-stat - Show statistics about features contained in GFF3 files.
SYNOPSIS
gt stat [option …] [GFF3_file …]
DESCRIPTION
- -genelengthdistri [yes|no]
- 
show gene length distribution (default: no) 
- -genescoredistri [yes|no]
- 
show gene score distribution (default: no) 
- -exonlengthdistri [yes|no]
- 
show exon length distribution (default: no) 
- -exonnumberdistri [yes|no]
- 
show exon number distribution (default: no) 
- -intronlengthdistri [yes|no]
- 
show intron length distribution (default: no) 
- -cdslengthdistri [yes|no]
- 
show CDS length distribution (measured in amino acids) (default: no) 
- -source [yes|no]
- 
show the set of used source tags (column 2 in regular GFF3 lines) (default: no) 
- -addintrons [yes|no]
- 
add intron features between existing exon features (before computing stats) (default: no) 
- -v [yes|no]
- 
be verbose (default: no) 
- -o [filename]
- 
redirect output to specified file (default: undefined) 
- -gzip [yes|no]
- 
write gzip compressed output file (default: no) 
- -bzip2 [yes|no]
- 
write bzip2 compressed output file (default: no) 
- -force [yes|no]
- 
force writing to output file (default: no) 
- -help
- 
display help and exit 
- -version
- 
display version information and exit 
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.