NAME
gt-tallymer-search - Search a set of k-mers in an index constructed by “gt tallymer mkindex”.
SYNOPSIS
gt tallymer search [options] -tyr tallymer-index -q queryfile0 [queryfile1..] [options]
DESCRIPTION
- -tyr [string]
- 
specify tallymer-index (default: undefined) 
- -q
- 
specify query file names 
- -strand [string]
- 
specify the strand to be searched: use f (for forward strand) or p (for reverse complemented strand) or fp (for both); default is f (default: f) 
- -output
- 
specify output flags (qseqnum, qpos, counts, sequence) 
- -v [yes|no]
- 
be verbose (default: no) 
- -help
- 
display help and exit 
- -version
- 
display version information and exit 
REPORTING BUGS
Report bugs to <kurtz@zbh.uni-hamburg.de>.