NAME
gt-encseq-decode - Decode/extract encoded sequences.
SYNOPSIS
gt encseq decode (sequence_file|indexname)
DESCRIPTION
- -mirrored [yes|no]
- 
virtually append the reverse complement of each sequence (default: no) 
- -lossless [yes|no]
- 
allow lossless original sequence retrieval (default: no) 
- -dir [string]
- 
specify reading direction (fwd, cpl, rev, rcl) (default: fwd) 
- -singlechars [yes|no]
- 
do not use a GtEncseqReader but access each sequence character separately (default: no) 
- -seq [value]
- 
extract sequence identified by its number (default: undefined) 
- -seqrange [start end]
- 
extract multiple consecutive sequences (default: undefined) 
- -output […]
- 
specify output format (choose from fasta|concat) (default: fasta) 
- -range [start end]
- 
concatenated range to extract (implies -output concat) (default: undefined) 
- -sepchar [string]
- 
specify character to print as SEPARATOR (default: |) 
- -help
- 
display help for basic options and exit 
- -help+
- 
display help for all options and exit 
- -version
- 
display version information and exit 
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.