Index

Symbols

--container-engine cwl-docker-extract command line option --dir cwl-docker-extract command line option --etools cwl-expression-refactor command line option cwl-normalizer command line option --force-download cwl-docker-extract command line option --help cwl-cite-extract command line option cwl-docker-extract command line option cwl-expression-refactor command line option cwl-graph-split command line option cwl-inputs-schema-gen command line option cwl-normalizer command line option --mainfile cwl-graph-split command line option --no-expression-refactoring cwl-normalizer command line option --outdir cwl-graph-split command line option --output cwl-inputs-schema-gen command line option --output-format cwl-graph-split command line option --pretty cwl-graph-split command line option

--singularity cwl-docker-extract command line option --skip-some1 cwl-expression-refactor command line option cwl-normalizer command line option --skip-some2 cwl-expression-refactor command line option cwl-normalizer command line option -C cwl-graph-split command line option -f cwl-graph-split command line option -h cwl-cite-extract command line option cwl-docker-extract command line option cwl-expression-refactor command line option cwl-graph-split command line option cwl-inputs-schema-gen command line option cwl-normalizer command line option -m cwl-graph-split command line option -o cwl-inputs-schema-gen command line option -p cwl-graph-split command line option -s cwl-docker-extract command line option

_

__call__() (cwl_utils.expression_refactor.saveCWL method) __del__() (cwl_utils.sandboxjs.NodeJSEngine method) __eq__() (cwl_utils.parser.cwl_v1_0.ArraySchema method) (cwl_utils.parser.cwl_v1_0.CommandInputArraySchema method) (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema method) (cwl_utils.parser.cwl_v1_0.CommandInputParameter method) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField method) (cwl_utils.parser.cwl_v1_0.CommandInputRecordSchema method) (cwl_utils.parser.cwl_v1_0.CommandLineBinding method) (cwl_utils.parser.cwl_v1_0.CommandLineTool method) (cwl_utils.parser.cwl_v1_0.CommandOutputArraySchema method) (cwl_utils.parser.cwl_v1_0.CommandOutputBinding method) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema method) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter method) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordField method) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordSchema method) (cwl_utils.parser.cwl_v1_0.CUDARequirement method) (cwl_utils.parser.cwl_v1_0.CWLArraySchema method) (cwl_utils.parser.cwl_v1_0.CWLRecordField method) (cwl_utils.parser.cwl_v1_0.CWLRecordSchema method) (cwl_utils.parser.cwl_v1_0.Directory method) (cwl_utils.parser.cwl_v1_0.Dirent method) (cwl_utils.parser.cwl_v1_0.DockerRequirement method) (cwl_utils.parser.cwl_v1_0.EnumSchema method) (cwl_utils.parser.cwl_v1_0.EnvironmentDef method) (cwl_utils.parser.cwl_v1_0.EnvVarRequirement method) (cwl_utils.parser.cwl_v1_0.ExpressionTool method) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter method) (cwl_utils.parser.cwl_v1_0.File method) (cwl_utils.parser.cwl_v1_0.InitialWorkDirRequirement method) (cwl_utils.parser.cwl_v1_0.InlineJavascriptRequirement method) (cwl_utils.parser.cwl_v1_0.InplaceUpdateRequirement method) (cwl_utils.parser.cwl_v1_0.InputArraySchema method) (cwl_utils.parser.cwl_v1_0.InputEnumSchema method) (cwl_utils.parser.cwl_v1_0.InputParameter method) (cwl_utils.parser.cwl_v1_0.InputRecordField method) (cwl_utils.parser.cwl_v1_0.InputRecordSchema method) (cwl_utils.parser.cwl_v1_0.LoadListingRequirement method) (cwl_utils.parser.cwl_v1_0.MapSchema method) (cwl_utils.parser.cwl_v1_0.MPIRequirement method) (cwl_utils.parser.cwl_v1_0.MultipleInputFeatureRequirement method) (cwl_utils.parser.cwl_v1_0.NetworkAccess method) (cwl_utils.parser.cwl_v1_0.OutputArraySchema method) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema method) (cwl_utils.parser.cwl_v1_0.OutputParameter method) (cwl_utils.parser.cwl_v1_0.OutputRecordField method) (cwl_utils.parser.cwl_v1_0.OutputRecordSchema method) (cwl_utils.parser.cwl_v1_0.ProcessGenerator method) (cwl_utils.parser.cwl_v1_0.RecordField method) (cwl_utils.parser.cwl_v1_0.RecordSchema method) (cwl_utils.parser.cwl_v1_0.ResourceRequirement method) (cwl_utils.parser.cwl_v1_0.ScatterFeatureRequirement method) (cwl_utils.parser.cwl_v1_0.SchemaDefRequirement method) (cwl_utils.parser.cwl_v1_0.Secrets method) (cwl_utils.parser.cwl_v1_0.ShellCommandRequirement method) (cwl_utils.parser.cwl_v1_0.ShmSize method) (cwl_utils.parser.cwl_v1_0.SoftwarePackage method) (cwl_utils.parser.cwl_v1_0.SoftwareRequirement method) (cwl_utils.parser.cwl_v1_0.StepInputExpressionRequirement method) (cwl_utils.parser.cwl_v1_0.SubworkflowFeatureRequirement method) (cwl_utils.parser.cwl_v1_0.TimeLimit method) (cwl_utils.parser.cwl_v1_0.UnionSchema method) (cwl_utils.parser.cwl_v1_0.Workflow method) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter method) (cwl_utils.parser.cwl_v1_0.WorkflowStep method) (cwl_utils.parser.cwl_v1_0.WorkflowStepInput method) (cwl_utils.parser.cwl_v1_0.WorkflowStepOutput method) (cwl_utils.parser.cwl_v1_0.WorkReuse method) (cwl_utils.parser.cwl_v1_1.ArraySchema method) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema method) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema method) (cwl_utils.parser.cwl_v1_1.CommandInputParameter method) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField method) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema method) (cwl_utils.parser.cwl_v1_1.CommandLineBinding method) (cwl_utils.parser.cwl_v1_1.CommandLineTool method) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema method) (cwl_utils.parser.cwl_v1_1.CommandOutputBinding method) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema method) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter method) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField method) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema method) (cwl_utils.parser.cwl_v1_1.CUDARequirement method) (cwl_utils.parser.cwl_v1_1.CWLArraySchema method) (cwl_utils.parser.cwl_v1_1.CWLRecordField method) (cwl_utils.parser.cwl_v1_1.CWLRecordSchema method) (cwl_utils.parser.cwl_v1_1.Directory method) (cwl_utils.parser.cwl_v1_1.Dirent method) (cwl_utils.parser.cwl_v1_1.DockerRequirement method) (cwl_utils.parser.cwl_v1_1.EnumSchema method) (cwl_utils.parser.cwl_v1_1.EnvironmentDef method) (cwl_utils.parser.cwl_v1_1.EnvVarRequirement method) (cwl_utils.parser.cwl_v1_1.ExpressionTool method) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter method) (cwl_utils.parser.cwl_v1_1.File method) (cwl_utils.parser.cwl_v1_1.InitialWorkDirRequirement method) (cwl_utils.parser.cwl_v1_1.InlineJavascriptRequirement method) (cwl_utils.parser.cwl_v1_1.InplaceUpdateRequirement method) (cwl_utils.parser.cwl_v1_1.InputArraySchema method) (cwl_utils.parser.cwl_v1_1.InputBinding method) (cwl_utils.parser.cwl_v1_1.InputEnumSchema method) (cwl_utils.parser.cwl_v1_1.InputRecordField method) (cwl_utils.parser.cwl_v1_1.InputRecordSchema method) (cwl_utils.parser.cwl_v1_1.LoadListingRequirement method) (cwl_utils.parser.cwl_v1_1.MapSchema method) (cwl_utils.parser.cwl_v1_1.MPIRequirement method) (cwl_utils.parser.cwl_v1_1.MultipleInputFeatureRequirement method) (cwl_utils.parser.cwl_v1_1.NetworkAccess method) (cwl_utils.parser.cwl_v1_1.OutputArraySchema method) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema method) (cwl_utils.parser.cwl_v1_1.OutputRecordField method) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema method) (cwl_utils.parser.cwl_v1_1.ProcessGenerator method) (cwl_utils.parser.cwl_v1_1.RecordField method) (cwl_utils.parser.cwl_v1_1.RecordSchema method) (cwl_utils.parser.cwl_v1_1.ResourceRequirement method) (cwl_utils.parser.cwl_v1_1.ScatterFeatureRequirement method) (cwl_utils.parser.cwl_v1_1.SchemaDefRequirement method) (cwl_utils.parser.cwl_v1_1.SecondaryFileSchema method) (cwl_utils.parser.cwl_v1_1.Secrets method) (cwl_utils.parser.cwl_v1_1.ShellCommandRequirement method) (cwl_utils.parser.cwl_v1_1.ShmSize method) (cwl_utils.parser.cwl_v1_1.SoftwarePackage method) (cwl_utils.parser.cwl_v1_1.SoftwareRequirement method) (cwl_utils.parser.cwl_v1_1.StepInputExpressionRequirement method) (cwl_utils.parser.cwl_v1_1.SubworkflowFeatureRequirement method) (cwl_utils.parser.cwl_v1_1.ToolTimeLimit method) (cwl_utils.parser.cwl_v1_1.UnionSchema method) (cwl_utils.parser.cwl_v1_1.Workflow method) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter method) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter method) (cwl_utils.parser.cwl_v1_1.WorkflowStep method) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput method) (cwl_utils.parser.cwl_v1_1.WorkflowStepOutput method) (cwl_utils.parser.cwl_v1_1.WorkReuse method) (cwl_utils.parser.cwl_v1_2.ArraySchema method) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema method) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema method) (cwl_utils.parser.cwl_v1_2.CommandInputParameter method) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField method) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema method) (cwl_utils.parser.cwl_v1_2.CommandLineBinding method) (cwl_utils.parser.cwl_v1_2.CommandLineTool method) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema method) (cwl_utils.parser.cwl_v1_2.CommandOutputBinding method) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema method) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter method) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField method) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema method) (cwl_utils.parser.cwl_v1_2.CUDARequirement method) (cwl_utils.parser.cwl_v1_2.CWLArraySchema method) (cwl_utils.parser.cwl_v1_2.CWLRecordField method) (cwl_utils.parser.cwl_v1_2.CWLRecordSchema method) (cwl_utils.parser.cwl_v1_2.Directory method) (cwl_utils.parser.cwl_v1_2.Dirent method) (cwl_utils.parser.cwl_v1_2.DockerRequirement method) (cwl_utils.parser.cwl_v1_2.EnumSchema method) (cwl_utils.parser.cwl_v1_2.EnvironmentDef method) (cwl_utils.parser.cwl_v1_2.EnvVarRequirement method) (cwl_utils.parser.cwl_v1_2.ExpressionTool method) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter method) (cwl_utils.parser.cwl_v1_2.File method) (cwl_utils.parser.cwl_v1_2.InitialWorkDirRequirement method) (cwl_utils.parser.cwl_v1_2.InlineJavascriptRequirement method) (cwl_utils.parser.cwl_v1_2.InplaceUpdateRequirement method) (cwl_utils.parser.cwl_v1_2.InputArraySchema method) (cwl_utils.parser.cwl_v1_2.InputBinding method) (cwl_utils.parser.cwl_v1_2.InputEnumSchema method) (cwl_utils.parser.cwl_v1_2.InputRecordField method) (cwl_utils.parser.cwl_v1_2.InputRecordSchema method) (cwl_utils.parser.cwl_v1_2.LoadListingRequirement method) (cwl_utils.parser.cwl_v1_2.Loop method) (cwl_utils.parser.cwl_v1_2.LoopInput method) (cwl_utils.parser.cwl_v1_2.MapSchema method) (cwl_utils.parser.cwl_v1_2.MPIRequirement method) (cwl_utils.parser.cwl_v1_2.MultipleInputFeatureRequirement method) (cwl_utils.parser.cwl_v1_2.NetworkAccess method) (cwl_utils.parser.cwl_v1_2.Operation method) (cwl_utils.parser.cwl_v1_2.OperationInputParameter method) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter method) (cwl_utils.parser.cwl_v1_2.OutputArraySchema method) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema method) (cwl_utils.parser.cwl_v1_2.OutputRecordField method) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema method) (cwl_utils.parser.cwl_v1_2.ProcessGenerator method) (cwl_utils.parser.cwl_v1_2.RecordField method) (cwl_utils.parser.cwl_v1_2.RecordSchema method) (cwl_utils.parser.cwl_v1_2.ResourceRequirement method) (cwl_utils.parser.cwl_v1_2.ScatterFeatureRequirement method) (cwl_utils.parser.cwl_v1_2.SchemaDefRequirement method) (cwl_utils.parser.cwl_v1_2.SecondaryFileSchema method) (cwl_utils.parser.cwl_v1_2.Secrets method) (cwl_utils.parser.cwl_v1_2.ShellCommandRequirement method) (cwl_utils.parser.cwl_v1_2.ShmSize method) (cwl_utils.parser.cwl_v1_2.SoftwarePackage method) (cwl_utils.parser.cwl_v1_2.SoftwareRequirement method) (cwl_utils.parser.cwl_v1_2.StepInputExpressionRequirement method) (cwl_utils.parser.cwl_v1_2.SubworkflowFeatureRequirement method) (cwl_utils.parser.cwl_v1_2.ToolTimeLimit method) (cwl_utils.parser.cwl_v1_2.UnionSchema method) (cwl_utils.parser.cwl_v1_2.Workflow method) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter method) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter method) (cwl_utils.parser.cwl_v1_2.WorkflowStep method) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput method) (cwl_utils.parser.cwl_v1_2.WorkflowStepOutput method) (cwl_utils.parser.cwl_v1_2.WorkReuse method)

__hash__() (cwl_utils.parser.cwl_v1_0.ArraySchema method) (cwl_utils.parser.cwl_v1_0.CommandInputArraySchema method) (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema method) (cwl_utils.parser.cwl_v1_0.CommandInputParameter method) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField method) (cwl_utils.parser.cwl_v1_0.CommandInputRecordSchema method) (cwl_utils.parser.cwl_v1_0.CommandLineBinding method) (cwl_utils.parser.cwl_v1_0.CommandLineTool method) (cwl_utils.parser.cwl_v1_0.CommandOutputArraySchema method) (cwl_utils.parser.cwl_v1_0.CommandOutputBinding method) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema method) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter method) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordField method) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordSchema method) (cwl_utils.parser.cwl_v1_0.CUDARequirement method) (cwl_utils.parser.cwl_v1_0.CWLArraySchema method) (cwl_utils.parser.cwl_v1_0.CWLRecordField method) (cwl_utils.parser.cwl_v1_0.CWLRecordSchema method) (cwl_utils.parser.cwl_v1_0.Directory method) (cwl_utils.parser.cwl_v1_0.Dirent method) (cwl_utils.parser.cwl_v1_0.DockerRequirement method) (cwl_utils.parser.cwl_v1_0.EnumSchema method) (cwl_utils.parser.cwl_v1_0.EnvironmentDef method) (cwl_utils.parser.cwl_v1_0.EnvVarRequirement method) (cwl_utils.parser.cwl_v1_0.ExpressionTool method) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter method) (cwl_utils.parser.cwl_v1_0.File method) (cwl_utils.parser.cwl_v1_0.InitialWorkDirRequirement method) (cwl_utils.parser.cwl_v1_0.InlineJavascriptRequirement method) (cwl_utils.parser.cwl_v1_0.InplaceUpdateRequirement method) (cwl_utils.parser.cwl_v1_0.InputArraySchema method) (cwl_utils.parser.cwl_v1_0.InputEnumSchema method) (cwl_utils.parser.cwl_v1_0.InputParameter method) (cwl_utils.parser.cwl_v1_0.InputRecordField method) (cwl_utils.parser.cwl_v1_0.InputRecordSchema method) (cwl_utils.parser.cwl_v1_0.LoadListingRequirement method) (cwl_utils.parser.cwl_v1_0.MapSchema method) (cwl_utils.parser.cwl_v1_0.MPIRequirement method) (cwl_utils.parser.cwl_v1_0.MultipleInputFeatureRequirement method) (cwl_utils.parser.cwl_v1_0.NetworkAccess method) (cwl_utils.parser.cwl_v1_0.OutputArraySchema method) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema method) (cwl_utils.parser.cwl_v1_0.OutputParameter method) (cwl_utils.parser.cwl_v1_0.OutputRecordField method) (cwl_utils.parser.cwl_v1_0.OutputRecordSchema method) (cwl_utils.parser.cwl_v1_0.ProcessGenerator method) (cwl_utils.parser.cwl_v1_0.RecordField method) (cwl_utils.parser.cwl_v1_0.RecordSchema method) (cwl_utils.parser.cwl_v1_0.ResourceRequirement method) (cwl_utils.parser.cwl_v1_0.ScatterFeatureRequirement method) (cwl_utils.parser.cwl_v1_0.SchemaDefRequirement method) (cwl_utils.parser.cwl_v1_0.Secrets method) (cwl_utils.parser.cwl_v1_0.ShellCommandRequirement method) (cwl_utils.parser.cwl_v1_0.ShmSize method) (cwl_utils.parser.cwl_v1_0.SoftwarePackage method) (cwl_utils.parser.cwl_v1_0.SoftwareRequirement method) (cwl_utils.parser.cwl_v1_0.StepInputExpressionRequirement method) (cwl_utils.parser.cwl_v1_0.SubworkflowFeatureRequirement method) (cwl_utils.parser.cwl_v1_0.TimeLimit method) (cwl_utils.parser.cwl_v1_0.UnionSchema method) (cwl_utils.parser.cwl_v1_0.Workflow method) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter method) (cwl_utils.parser.cwl_v1_0.WorkflowStep method) (cwl_utils.parser.cwl_v1_0.WorkflowStepInput method) (cwl_utils.parser.cwl_v1_0.WorkflowStepOutput method) (cwl_utils.parser.cwl_v1_0.WorkReuse method) (cwl_utils.parser.cwl_v1_1.ArraySchema method) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema method) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema method) (cwl_utils.parser.cwl_v1_1.CommandInputParameter method) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField method) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema method) (cwl_utils.parser.cwl_v1_1.CommandLineBinding method) (cwl_utils.parser.cwl_v1_1.CommandLineTool method) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema method) (cwl_utils.parser.cwl_v1_1.CommandOutputBinding method) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema method) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter method) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField method) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema method) (cwl_utils.parser.cwl_v1_1.CUDARequirement method) (cwl_utils.parser.cwl_v1_1.CWLArraySchema method) (cwl_utils.parser.cwl_v1_1.CWLRecordField method) (cwl_utils.parser.cwl_v1_1.CWLRecordSchema method) (cwl_utils.parser.cwl_v1_1.Directory method) (cwl_utils.parser.cwl_v1_1.Dirent method) (cwl_utils.parser.cwl_v1_1.DockerRequirement method) (cwl_utils.parser.cwl_v1_1.EnumSchema method) (cwl_utils.parser.cwl_v1_1.EnvironmentDef method) (cwl_utils.parser.cwl_v1_1.EnvVarRequirement method) (cwl_utils.parser.cwl_v1_1.ExpressionTool method) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter method) (cwl_utils.parser.cwl_v1_1.File method) (cwl_utils.parser.cwl_v1_1.InitialWorkDirRequirement method) (cwl_utils.parser.cwl_v1_1.InlineJavascriptRequirement method) (cwl_utils.parser.cwl_v1_1.InplaceUpdateRequirement method) (cwl_utils.parser.cwl_v1_1.InputArraySchema method) (cwl_utils.parser.cwl_v1_1.InputBinding method) (cwl_utils.parser.cwl_v1_1.InputEnumSchema method) (cwl_utils.parser.cwl_v1_1.InputRecordField method) (cwl_utils.parser.cwl_v1_1.InputRecordSchema method) (cwl_utils.parser.cwl_v1_1.LoadListingRequirement method) (cwl_utils.parser.cwl_v1_1.MapSchema method) (cwl_utils.parser.cwl_v1_1.MPIRequirement method) (cwl_utils.parser.cwl_v1_1.MultipleInputFeatureRequirement method) (cwl_utils.parser.cwl_v1_1.NetworkAccess method) (cwl_utils.parser.cwl_v1_1.OutputArraySchema method) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema method) (cwl_utils.parser.cwl_v1_1.OutputRecordField method) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema method) (cwl_utils.parser.cwl_v1_1.ProcessGenerator method) (cwl_utils.parser.cwl_v1_1.RecordField method) (cwl_utils.parser.cwl_v1_1.RecordSchema method) (cwl_utils.parser.cwl_v1_1.ResourceRequirement method) (cwl_utils.parser.cwl_v1_1.ScatterFeatureRequirement method) (cwl_utils.parser.cwl_v1_1.SchemaDefRequirement method) (cwl_utils.parser.cwl_v1_1.SecondaryFileSchema method) (cwl_utils.parser.cwl_v1_1.Secrets method) (cwl_utils.parser.cwl_v1_1.ShellCommandRequirement method) (cwl_utils.parser.cwl_v1_1.ShmSize method) (cwl_utils.parser.cwl_v1_1.SoftwarePackage method) (cwl_utils.parser.cwl_v1_1.SoftwareRequirement method) (cwl_utils.parser.cwl_v1_1.StepInputExpressionRequirement method) (cwl_utils.parser.cwl_v1_1.SubworkflowFeatureRequirement method) (cwl_utils.parser.cwl_v1_1.ToolTimeLimit method) (cwl_utils.parser.cwl_v1_1.UnionSchema method) (cwl_utils.parser.cwl_v1_1.Workflow method) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter method) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter method) (cwl_utils.parser.cwl_v1_1.WorkflowStep method) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput method) (cwl_utils.parser.cwl_v1_1.WorkflowStepOutput method) (cwl_utils.parser.cwl_v1_1.WorkReuse method) (cwl_utils.parser.cwl_v1_2.ArraySchema method) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema method) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema method) (cwl_utils.parser.cwl_v1_2.CommandInputParameter method) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField method) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema method) (cwl_utils.parser.cwl_v1_2.CommandLineBinding method) (cwl_utils.parser.cwl_v1_2.CommandLineTool method) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema method) (cwl_utils.parser.cwl_v1_2.CommandOutputBinding method) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema method) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter method) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField method) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema method) (cwl_utils.parser.cwl_v1_2.CUDARequirement method) (cwl_utils.parser.cwl_v1_2.CWLArraySchema method) (cwl_utils.parser.cwl_v1_2.CWLRecordField method) (cwl_utils.parser.cwl_v1_2.CWLRecordSchema method) (cwl_utils.parser.cwl_v1_2.Directory method) (cwl_utils.parser.cwl_v1_2.Dirent method) (cwl_utils.parser.cwl_v1_2.DockerRequirement method) (cwl_utils.parser.cwl_v1_2.EnumSchema method) (cwl_utils.parser.cwl_v1_2.EnvironmentDef method) (cwl_utils.parser.cwl_v1_2.EnvVarRequirement method) (cwl_utils.parser.cwl_v1_2.ExpressionTool method) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter method) (cwl_utils.parser.cwl_v1_2.File method) (cwl_utils.parser.cwl_v1_2.InitialWorkDirRequirement method) (cwl_utils.parser.cwl_v1_2.InlineJavascriptRequirement method) (cwl_utils.parser.cwl_v1_2.InplaceUpdateRequirement method) (cwl_utils.parser.cwl_v1_2.InputArraySchema method) (cwl_utils.parser.cwl_v1_2.InputBinding method) (cwl_utils.parser.cwl_v1_2.InputEnumSchema method) (cwl_utils.parser.cwl_v1_2.InputRecordField method) (cwl_utils.parser.cwl_v1_2.InputRecordSchema method) (cwl_utils.parser.cwl_v1_2.LoadListingRequirement method) (cwl_utils.parser.cwl_v1_2.Loop method) (cwl_utils.parser.cwl_v1_2.LoopInput method) (cwl_utils.parser.cwl_v1_2.MapSchema method) (cwl_utils.parser.cwl_v1_2.MPIRequirement method) (cwl_utils.parser.cwl_v1_2.MultipleInputFeatureRequirement method) (cwl_utils.parser.cwl_v1_2.NetworkAccess method) (cwl_utils.parser.cwl_v1_2.Operation method) (cwl_utils.parser.cwl_v1_2.OperationInputParameter method) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter method) (cwl_utils.parser.cwl_v1_2.OutputArraySchema method) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema method) (cwl_utils.parser.cwl_v1_2.OutputRecordField method) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema method) (cwl_utils.parser.cwl_v1_2.ProcessGenerator method) (cwl_utils.parser.cwl_v1_2.RecordField method) (cwl_utils.parser.cwl_v1_2.RecordSchema method) (cwl_utils.parser.cwl_v1_2.ResourceRequirement method) (cwl_utils.parser.cwl_v1_2.ScatterFeatureRequirement method) (cwl_utils.parser.cwl_v1_2.SchemaDefRequirement method) (cwl_utils.parser.cwl_v1_2.SecondaryFileSchema method) (cwl_utils.parser.cwl_v1_2.Secrets method) (cwl_utils.parser.cwl_v1_2.ShellCommandRequirement method) (cwl_utils.parser.cwl_v1_2.ShmSize method) (cwl_utils.parser.cwl_v1_2.SoftwarePackage method) (cwl_utils.parser.cwl_v1_2.SoftwareRequirement method) (cwl_utils.parser.cwl_v1_2.StepInputExpressionRequirement method) (cwl_utils.parser.cwl_v1_2.SubworkflowFeatureRequirement method) (cwl_utils.parser.cwl_v1_2.ToolTimeLimit method) (cwl_utils.parser.cwl_v1_2.UnionSchema method) (cwl_utils.parser.cwl_v1_2.Workflow method) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter method) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter method) (cwl_utils.parser.cwl_v1_2.WorkflowStep method) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput method) (cwl_utils.parser.cwl_v1_2.WorkflowStepOutput method) (cwl_utils.parser.cwl_v1_2.WorkReuse method) __version__ (in module cwl_utils.__meta__)

A

add_input_to_process() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) add_missing_requirements() (in module cwl_utils.pack) addl_metadata (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) Any_type (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) AnyLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) arg_parser() (in module cwl_utils.cite_extract) (in module cwl_utils.docker_extract) (in module cwl_utils.expression_refactor) (in module cwl_utils.graph_split) (in module cwl_utils.inputs_schema_gen) (in module cwl_utils.normalizer) arguments (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) Array_nameLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_Any_type (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_CommandInputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_CommandInputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_CommandOutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_CommandOutputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_CWLRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_EnvironmentDefLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_ExpressionToolOutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_InputParameterLoader (in module cwl_utils.parser.cwl_v1_0) array_of_InputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_inttype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_LoopInputLoader (in module cwl_utils.parser.cwl_v1_2) array_of_OperationInputParameterLoader (in module cwl_utils.parser.cwl_v1_2) array_of_OperationOutputParameterLoader (in module cwl_utils.parser.cwl_v1_2) array_of_OutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) array_of_OutputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_RecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_SecondaryFileSchemaLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_SoftwarePackageLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_CommandInputParameterLoader_or_WorkflowInputParameterLoader (in module cwl_utils.parser.cwl_v1_1) array_of_union_of_CommandInputParameterLoader_or_WorkflowInputParameterLoader_or_OperationInputParameterLoader (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_OperationLoader_or_ProcessGeneratorLoader (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_ProcessGeneratorLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) array_of_union_of_CommandOutputParameterLoader_or_ExpressionToolOutputParameterLoader_or_WorkflowOutputParameterLoader (in module cwl_utils.parser.cwl_v1_1) array_of_union_of_CommandOutputParameterLoader_or_ExpressionToolOutputParameterLoader_or_WorkflowOutputParameterLoader_or_OperationOutputParameterLoader (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_FileLoader_or_DirectoryLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_FileLoader_or_DirectoryLoader_or_DirentLoader_or_strtype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_LoadListingRequirementLoader_or_InplaceUpdateRequirementLoader_or_SecretsLoader_or_TimeLimitLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_0) array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_LoadListingRequirementLoader_or_InplaceUpdateRequirementLoader_or_SecretsLoader_or_TimeLimitLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_0) array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_1) array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_1) array_of_union_of_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader (in module cwl_utils.parser.cwl_v1_0) array_of_union_of_None_type_or_CWLObjectTypeLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_None_type_or_DirentLoader_or_ExpressionLoader_or_FileLoader_or_DirectoryLoader_or_array_of_union_of_FileLoader_or_DirectoryLoader (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_None_type_or_FileLoader_or_array_of_union_of_FileLoader_or_DirectoryLoader_or_DirectoryLoader_or_DirentLoader_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_1) array_of_union_of_PrimitiveTypeLoader_or_CWLRecordSchemaLoader_or_EnumSchemaLoader_or_CWLArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_PrimitiveTypeLoader_or_RecordSchemaLoader_or_EnumSchemaLoader_or_ArraySchemaLoader_or_MapSchemaLoader_or_UnionSchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_strtype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) array_of_union_of_strtype_or_ExpressionLoader_or_CommandLineBindingLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_union_of_strtype_or_WorkflowStepOutputLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_WorkflowInputParameterLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_WorkflowOutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_WorkflowStepInputLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) array_of_WorkflowStepLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ArrayMissingItems ArraySchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) ArraySchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) attrs (cwl_utils.parser.cwl_v1_0.ArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_0.CWLArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_0.CWLRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.Directory attribute) (cwl_utils.parser.cwl_v1_0.Dirent attribute) (cwl_utils.parser.cwl_v1_0.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_0.EnumSchema attribute) (cwl_utils.parser.cwl_v1_0.EnvironmentDef attribute) (cwl_utils.parser.cwl_v1_0.EnvVarRequirement attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_0.InitialWorkDirRequirement attribute) (cwl_utils.parser.cwl_v1_0.InlineJavascriptRequirement attribute) (cwl_utils.parser.cwl_v1_0.InplaceUpdateRequirement attribute) (cwl_utils.parser.cwl_v1_0.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputRecordField attribute) (cwl_utils.parser.cwl_v1_0.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.LoadListingRequirement attribute) (cwl_utils.parser.cwl_v1_0.MapSchema attribute) (cwl_utils.parser.cwl_v1_0.MPIRequirement attribute) (cwl_utils.parser.cwl_v1_0.MultipleInputFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_0.NetworkAccess attribute) (cwl_utils.parser.cwl_v1_0.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputParameter attribute) (cwl_utils.parser.cwl_v1_0.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.RecordField attribute) (cwl_utils.parser.cwl_v1_0.RecordSchema attribute) (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_0.ScatterFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_0.SchemaDefRequirement attribute) (cwl_utils.parser.cwl_v1_0.Secrets attribute) (cwl_utils.parser.cwl_v1_0.ShellCommandRequirement attribute) (cwl_utils.parser.cwl_v1_0.ShmSize attribute) (cwl_utils.parser.cwl_v1_0.SoftwarePackage attribute) (cwl_utils.parser.cwl_v1_0.SoftwareRequirement attribute) (cwl_utils.parser.cwl_v1_0.StepInputExpressionRequirement attribute) (cwl_utils.parser.cwl_v1_0.SubworkflowFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_0.TimeLimit attribute) (cwl_utils.parser.cwl_v1_0.UnionSchema attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStepOutput attribute) (cwl_utils.parser.cwl_v1_0.WorkReuse attribute) (cwl_utils.parser.cwl_v1_1.ArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_1.CWLArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_1.CWLRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.Directory attribute) (cwl_utils.parser.cwl_v1_1.Dirent attribute) (cwl_utils.parser.cwl_v1_1.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_1.EnumSchema attribute) (cwl_utils.parser.cwl_v1_1.EnvironmentDef attribute) (cwl_utils.parser.cwl_v1_1.EnvVarRequirement attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_1.InitialWorkDirRequirement attribute) (cwl_utils.parser.cwl_v1_1.InlineJavascriptRequirement attribute) (cwl_utils.parser.cwl_v1_1.InplaceUpdateRequirement attribute) (cwl_utils.parser.cwl_v1_1.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.InputBinding attribute) (cwl_utils.parser.cwl_v1_1.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.LoadListingRequirement attribute) (cwl_utils.parser.cwl_v1_1.MapSchema attribute) (cwl_utils.parser.cwl_v1_1.MPIRequirement attribute) (cwl_utils.parser.cwl_v1_1.MultipleInputFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_1.NetworkAccess attribute) (cwl_utils.parser.cwl_v1_1.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.RecordField attribute) (cwl_utils.parser.cwl_v1_1.RecordSchema attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ScatterFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_1.SchemaDefRequirement attribute) (cwl_utils.parser.cwl_v1_1.SecondaryFileSchema attribute) (cwl_utils.parser.cwl_v1_1.Secrets attribute) (cwl_utils.parser.cwl_v1_1.ShellCommandRequirement attribute) (cwl_utils.parser.cwl_v1_1.ShmSize attribute) (cwl_utils.parser.cwl_v1_1.SoftwarePackage attribute) (cwl_utils.parser.cwl_v1_1.SoftwareRequirement attribute) (cwl_utils.parser.cwl_v1_1.StepInputExpressionRequirement attribute) (cwl_utils.parser.cwl_v1_1.SubworkflowFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_1.ToolTimeLimit attribute) (cwl_utils.parser.cwl_v1_1.UnionSchema attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepOutput attribute) (cwl_utils.parser.cwl_v1_1.WorkReuse attribute) (cwl_utils.parser.cwl_v1_2.ArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_2.CWLArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_2.CWLRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.Directory attribute) (cwl_utils.parser.cwl_v1_2.Dirent attribute) (cwl_utils.parser.cwl_v1_2.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_2.EnumSchema attribute) (cwl_utils.parser.cwl_v1_2.EnvironmentDef attribute) (cwl_utils.parser.cwl_v1_2.EnvVarRequirement attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.File attribute) (cwl_utils.parser.cwl_v1_2.InitialWorkDirRequirement attribute) (cwl_utils.parser.cwl_v1_2.InlineJavascriptRequirement attribute) (cwl_utils.parser.cwl_v1_2.InplaceUpdateRequirement attribute) (cwl_utils.parser.cwl_v1_2.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.InputBinding attribute) (cwl_utils.parser.cwl_v1_2.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.LoadListingRequirement attribute) (cwl_utils.parser.cwl_v1_2.Loop attribute) (cwl_utils.parser.cwl_v1_2.LoopInput attribute) (cwl_utils.parser.cwl_v1_2.MapSchema attribute) (cwl_utils.parser.cwl_v1_2.MPIRequirement attribute) (cwl_utils.parser.cwl_v1_2.MultipleInputFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_2.NetworkAccess attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.RecordField attribute) (cwl_utils.parser.cwl_v1_2.RecordSchema attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ScatterFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_2.SchemaDefRequirement attribute) (cwl_utils.parser.cwl_v1_2.SecondaryFileSchema attribute) (cwl_utils.parser.cwl_v1_2.Secrets attribute) (cwl_utils.parser.cwl_v1_2.ShellCommandRequirement attribute) (cwl_utils.parser.cwl_v1_2.ShmSize attribute) (cwl_utils.parser.cwl_v1_2.SoftwarePackage attribute) (cwl_utils.parser.cwl_v1_2.SoftwareRequirement attribute) (cwl_utils.parser.cwl_v1_2.StepInputExpressionRequirement attribute) (cwl_utils.parser.cwl_v1_2.SubworkflowFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_2.ToolTimeLimit attribute) (cwl_utils.parser.cwl_v1_2.UnionSchema attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepOutput attribute) (cwl_utils.parser.cwl_v1_2.WorkReuse attribute)

B

BACKSLASH (cwl_utils.expression.t attribute) baseCommand (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) basename (cwl_utils.parser.cwl_v1_0.Directory attribute) (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_1.Directory attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_2.Directory attribute) (cwl_utils.parser.cwl_v1_2.File attribute)

baseuri (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) booltype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) BRACE (cwl_utils.expression.t attribute) build_user_defined_type_dict() (in module cwl_utils.schemadef) built_in_types (in module cwl_utils.types) bytes2str_in_dicts() (in module cwl_utils.utils)

C

cache (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) can_assign_src_to_sink() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) CHARS_TO_REPLACE (cwl_utils.image_puller.SingularityImagePuller attribute) check_all_types() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) check_format() (in module cwl_utils.file_formats) check_js_threshold_version() (cwl_utils.sandboxjs.NodeJSEngine method) (in module cwl_utils.sandboxjs) check_types() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) checksum (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_2.File attribute) class_ (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_0.Directory attribute) (cwl_utils.parser.cwl_v1_0.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_0.EnvVarRequirement attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_0.InitialWorkDirRequirement attribute) (cwl_utils.parser.cwl_v1_0.InlineJavascriptRequirement attribute) (cwl_utils.parser.cwl_v1_0.InplaceUpdateRequirement attribute) (cwl_utils.parser.cwl_v1_0.LoadListingRequirement attribute) (cwl_utils.parser.cwl_v1_0.MPIRequirement attribute) (cwl_utils.parser.cwl_v1_0.MultipleInputFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_0.NetworkAccess attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_0.ScatterFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_0.SchemaDefRequirement attribute) (cwl_utils.parser.cwl_v1_0.Secrets attribute) (cwl_utils.parser.cwl_v1_0.ShellCommandRequirement attribute) (cwl_utils.parser.cwl_v1_0.ShmSize attribute) (cwl_utils.parser.cwl_v1_0.SoftwareRequirement attribute) (cwl_utils.parser.cwl_v1_0.StepInputExpressionRequirement attribute) (cwl_utils.parser.cwl_v1_0.SubworkflowFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_0.TimeLimit attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_0.WorkReuse attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_1.Directory attribute) (cwl_utils.parser.cwl_v1_1.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_1.EnvVarRequirement attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_1.InitialWorkDirRequirement attribute) (cwl_utils.parser.cwl_v1_1.InlineJavascriptRequirement attribute) (cwl_utils.parser.cwl_v1_1.InplaceUpdateRequirement attribute) (cwl_utils.parser.cwl_v1_1.LoadListingRequirement attribute) (cwl_utils.parser.cwl_v1_1.MPIRequirement attribute) (cwl_utils.parser.cwl_v1_1.MultipleInputFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_1.NetworkAccess attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ScatterFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_1.SchemaDefRequirement attribute) (cwl_utils.parser.cwl_v1_1.Secrets attribute) (cwl_utils.parser.cwl_v1_1.ShellCommandRequirement attribute) (cwl_utils.parser.cwl_v1_1.ShmSize attribute) (cwl_utils.parser.cwl_v1_1.SoftwareRequirement attribute) (cwl_utils.parser.cwl_v1_1.StepInputExpressionRequirement attribute) (cwl_utils.parser.cwl_v1_1.SubworkflowFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_1.ToolTimeLimit attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_1.WorkReuse attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_2.Directory attribute) (cwl_utils.parser.cwl_v1_2.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_2.EnvVarRequirement attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.File attribute) (cwl_utils.parser.cwl_v1_2.InitialWorkDirRequirement attribute) (cwl_utils.parser.cwl_v1_2.InlineJavascriptRequirement attribute) (cwl_utils.parser.cwl_v1_2.InplaceUpdateRequirement attribute) (cwl_utils.parser.cwl_v1_2.LoadListingRequirement attribute) (cwl_utils.parser.cwl_v1_2.Loop attribute) (cwl_utils.parser.cwl_v1_2.MPIRequirement attribute) (cwl_utils.parser.cwl_v1_2.MultipleInputFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_2.NetworkAccess attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ScatterFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_2.SchemaDefRequirement attribute) (cwl_utils.parser.cwl_v1_2.Secrets attribute) (cwl_utils.parser.cwl_v1_2.ShellCommandRequirement attribute) (cwl_utils.parser.cwl_v1_2.ShmSize attribute) (cwl_utils.parser.cwl_v1_2.SoftwareRequirement attribute) (cwl_utils.parser.cwl_v1_2.StepInputExpressionRequirement attribute) (cwl_utils.parser.cwl_v1_2.SubworkflowFeatureRequirement attribute) (cwl_utils.parser.cwl_v1_2.ToolTimeLimit attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) (cwl_utils.parser.cwl_v1_2.WorkReuse attribute) clean_type_ids() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) cltool_inputs_to_etool_inputs() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) cltool_step_outputs_to_workflow_outputs() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) cmd (cwl_utils.image_puller.ImagePuller attribute) code_fragment_to_js() (in module cwl_utils.sandboxjs) CommandInputArraySchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CommandInputArraySchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandInputEnumSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CommandInputEnumSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandInputParameter (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) CommandInputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandInputRecordField (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CommandInputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandInputRecordSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CommandInputRecordSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandInputSchema (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CommandLineBindable (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CommandLineBinding (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) CommandLineBindingLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandLineTool (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) CommandLineTool_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandLineToolLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandLineToolTypes (in module cwl_utils.parser) CommandOutputArraySchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CommandOutputArraySchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandOutputBinding (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) CommandOutputBindingLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandOutputEnumSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CommandOutputEnumSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandOutputParameter (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) CommandOutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandOutputRecordField (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) CommandOutputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CommandOutputRecordSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CommandOutputRecordSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) container (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) CONTENT_LIMIT (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) content_limit_respected_read() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) content_limit_respected_read_bytes() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) contents (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_2.File attribute) convert_stdstreams_to_files() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) (in module cwl_utils.parser.utils) convert_typing() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) cores (cwl_utils.types.CWLRuntimeParameterContext attribute)

coresMax (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) coresMin (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) cudaComputeCapability (cwl_utils.parser.cwl_v1_0.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_1.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_2.CUDARequirement attribute) cudaDeviceCountMax (cwl_utils.parser.cwl_v1_0.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_1.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_2.CUDARequirement attribute) cudaDeviceCountMin (cwl_utils.parser.cwl_v1_0.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_1.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_2.CUDARequirement attribute) CUDARequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CUDARequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) cudaVersionMin (cwl_utils.parser.cwl_v1_0.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_1.CUDARequirement attribute) (cwl_utils.parser.cwl_v1_2.CUDARequirement attribute) cwl-cite-extract command line option --help -h input cwl-docker-extract command line option --container-engine --dir --force-download --help --singularity -h -s input cwl-expression-refactor command line option --etools --help --skip-some1 --skip-some2 -h dir inputs cwl-graph-split command line option --help --mainfile --outdir --output-format --pretty -C -f -h -m -p cwlfile cwl-inputs-schema-gen command line option --help --output -h -o cwl_url cwl-normalizer command line option --etools --help --no-expression-refactoring --skip-some1 --skip-some2 -h dir inputs cwl_file (in module cwl_utils.tests.load_cwl_by_path) cwl_obj (in module cwl_utils.tests.load_cwl_by_path) cwl_to_jsonschema() (in module cwl_utils.inputs_schema_gen) cwl_url cwl-inputs-schema-gen command line option cwl_utils module cwl_utils.__meta__ module cwl_utils.cite_extract module cwl_utils.cwl_v1_0_expression_refactor module cwl_utils.cwl_v1_1_expression_refactor module cwl_utils.cwl_v1_2_expression_refactor module cwl_utils.docker_extract module cwl_utils.errors module cwl_utils.expression module cwl_utils.expression_refactor module cwl_utils.file_formats module cwl_utils.graph_split module cwl_utils.image_puller module cwl_utils.inputs_schema_gen module cwl_utils.loghandler module cwl_utils.normalizer module cwl_utils.pack module cwl_utils.parser module cwl_utils.parser.cwl_v1_0 module cwl_utils.parser.cwl_v1_0_utils module cwl_utils.parser.cwl_v1_1 module cwl_utils.parser.cwl_v1_1_utils module cwl_utils.parser.cwl_v1_2 module cwl_utils.parser.cwl_v1_2_utils module cwl_utils.parser.latest module cwl_utils.parser.utils module cwl_utils.sandboxjs module cwl_utils.schemadef module cwl_utils.singularity module cwl_utils.tests module cwl_utils.tests.load_cwl_by_path module cwl_utils.tests.test_cite_extract module cwl_utils.tests.test_docker_extract module cwl_utils.tests.test_etools_to_clt module cwl_utils.tests.test_examples module cwl_utils.tests.test_extensions module cwl_utils.tests.test_format module cwl_utils.tests.test_graph_split module cwl_utils.tests.test_inputs_schema_gen module cwl_utils.tests.test_js_sandbox module cwl_utils.tests.test_meta module cwl_utils.tests.test_packing module cwl_utils.tests.test_parser module cwl_utils.tests.test_parser_utils module cwl_utils.tests.test_subscope module cwl_utils.tests.test_utils module cwl_utils.tests.util module cwl_utils.types module cwl_utils.utils module cwl_v1_0_dir() (in module cwl_utils.tests.test_etools_to_clt) cwl_version() (in module cwl_utils.parser) CWLArraySchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CWLArraySchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CWLDirectoryType (in module cwl_utils.types) cwlfile cwl-graph-split command line option CWLFileType (in module cwl_utils.types) CWLInputFileLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CWLObjectType (in module cwl_utils.types) CWLObjectTypeLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CWLOutputType (in module cwl_utils.types) CWLParameterContext (class in cwl_utils.types) CWLRecordField (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CWLRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CWLRecordSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) CWLRecordSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) CWLRuntimeParameterContext (class in cwl_utils.types) CWLTypeLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) cwlVersion (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) CWLVersionLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2)

D

DEFAULT (cwl_utils.expression.t attribute) default (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.LoopInput attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) default_timeout (in module cwl_utils.sandboxjs) defaultStreamHandler (in module cwl_utils.expression_refactor) (in module cwl_utils.graph_split) (in module cwl_utils.inputs_schema_gen) (in module cwl_utils.loghandler) (in module cwl_utils.normalizer) description (cwl_utils.inputs_schema_gen.JSONSchemaProperty attribute) dir cwl-expression-refactor command line option cwl-normalizer command line option Directory (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) Directory_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) DirectoryLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) Dirent (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) DirentLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) DirentType (class in cwl_utils.types) dirname (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_2.File attribute) do_eval() (in module cwl_utils.expression) doc (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputRecordField attribute) (cwl_utils.parser.cwl_v1_0.OutputParameter attribute) (cwl_utils.parser.cwl_v1_0.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.RecordField attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.RecordField attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.RecordField attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute)

dockerFile (cwl_utils.parser.cwl_v1_0.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_1.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_2.DockerRequirement attribute) dockerImageId (cwl_utils.parser.cwl_v1_0.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_1.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_2.DockerRequirement attribute) DockerImagePuller (class in cwl_utils.image_puller) dockerImport (cwl_utils.parser.cwl_v1_0.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_1.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_2.DockerRequirement attribute) dockerLoad (cwl_utils.parser.cwl_v1_0.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_1.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_2.DockerRequirement attribute) dockerOutputDirectory (cwl_utils.parser.cwl_v1_0.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_1.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_2.DockerRequirement attribute) dockerPull (cwl_utils.parser.cwl_v1_0.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_1.DockerRequirement attribute) (cwl_utils.parser.cwl_v1_2.DockerRequirement attribute) DockerRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) DockerRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) DockerRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) DockerRequirementTypes (in module cwl_utils.parser) Documented (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) DOLLAR (cwl_utils.expression.t attribute) DOUBLE_QUOTE (cwl_utils.expression.t attribute)

E

EDAM (in module cwl_utils.tests.test_format) EMPTY_FILE (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) empty_inputs() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) enableReuse (cwl_utils.parser.cwl_v1_0.WorkReuse attribute) (cwl_utils.parser.cwl_v1_1.WorkReuse attribute) (cwl_utils.parser.cwl_v1_2.WorkReuse attribute) entry (cwl_utils.parser.cwl_v1_0.Dirent attribute) (cwl_utils.parser.cwl_v1_1.Dirent attribute) (cwl_utils.parser.cwl_v1_2.Dirent attribute) (cwl_utils.types.DirentType attribute) entryname (cwl_utils.parser.cwl_v1_0.Dirent attribute) (cwl_utils.parser.cwl_v1_1.Dirent attribute) (cwl_utils.parser.cwl_v1_2.Dirent attribute) (cwl_utils.types.DirentType attribute) Enum_nameLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) EnumSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) EnumSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) envDef (cwl_utils.parser.cwl_v1_0.EnvVarRequirement attribute) (cwl_utils.parser.cwl_v1_1.EnvVarRequirement attribute) (cwl_utils.parser.cwl_v1_2.EnvVarRequirement attribute) EnvironmentDef (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) EnvironmentDefLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) envName (cwl_utils.parser.cwl_v1_0.EnvironmentDef attribute) (cwl_utils.parser.cwl_v1_1.EnvironmentDef attribute) (cwl_utils.parser.cwl_v1_2.EnvironmentDef attribute) envValue (cwl_utils.parser.cwl_v1_0.EnvironmentDef attribute) (cwl_utils.parser.cwl_v1_1.EnvironmentDef attribute) (cwl_utils.parser.cwl_v1_2.EnvironmentDef attribute) EnvVarRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) EnvVarRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) EnvVarRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2)

escape_expression_field() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) etool_to_cltool() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) eval() (cwl_utils.sandboxjs.JSEngine method) (cwl_utils.sandboxjs.NodeJSEngine method) evaluator() (in module cwl_utils.expression) example_input() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) exec_js_process() (cwl_utils.sandboxjs.NodeJSEngine method) (in module cwl_utils.sandboxjs) exitCode (cwl_utils.types.CWLRuntimeParameterContext attribute) expand_stream_shortcuts() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) expand_url() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) expression (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) expressionLib (cwl_utils.parser.cwl_v1_0.InlineJavascriptRequirement attribute) (cwl_utils.parser.cwl_v1_1.InlineJavascriptRequirement attribute) (cwl_utils.parser.cwl_v1_2.InlineJavascriptRequirement attribute) ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ExpressionTool (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) ExpressionTool_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ExpressionToolLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ExpressionToolOutputParameter (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) ExpressionToolOutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) extract_docker_reqs() (in module cwl_utils.docker_extract) extract_docker_requirements() (in module cwl_utils.docker_extract) extract_software_reqs() (in module cwl_utils.cite_extract) extract_type() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2)

F

fast_yaml (in module cwl_utils.utils) fetcher (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) FieldBase (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) fields (cwl_utils.parser.cwl_v1_0.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.CWLRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.RecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CWLRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.RecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CWLRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.RecordSchema attribute) File (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) File_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) file_uri() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) FileLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) fileuri (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) find_expressionLib() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) floattype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) force_pull (cwl_utils.image_puller.ImagePuller attribute) format (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.OutputParameter attribute) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.File attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) formatSubclassOf() (in module cwl_utils.file_formats) fromDoc() (cwl_utils.parser.cwl_v1_0.ArraySchema class method) (cwl_utils.parser.cwl_v1_0.CommandInputArraySchema class method) (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema class method) (cwl_utils.parser.cwl_v1_0.CommandInputParameter class method) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField class method) (cwl_utils.parser.cwl_v1_0.CommandInputRecordSchema class method) (cwl_utils.parser.cwl_v1_0.CommandLineBinding class method) (cwl_utils.parser.cwl_v1_0.CommandLineTool class method) (cwl_utils.parser.cwl_v1_0.CommandOutputArraySchema class method) (cwl_utils.parser.cwl_v1_0.CommandOutputBinding class method) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema class method) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter class method) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordField class method) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordSchema class method) (cwl_utils.parser.cwl_v1_0.CUDARequirement class method) (cwl_utils.parser.cwl_v1_0.CWLArraySchema class method) (cwl_utils.parser.cwl_v1_0.CWLRecordField class method) (cwl_utils.parser.cwl_v1_0.CWLRecordSchema class method) (cwl_utils.parser.cwl_v1_0.Directory class method) (cwl_utils.parser.cwl_v1_0.Dirent class method) (cwl_utils.parser.cwl_v1_0.DockerRequirement class method) (cwl_utils.parser.cwl_v1_0.EnumSchema class method) (cwl_utils.parser.cwl_v1_0.EnvironmentDef class method) (cwl_utils.parser.cwl_v1_0.EnvVarRequirement class method) (cwl_utils.parser.cwl_v1_0.ExpressionTool class method) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter class method) (cwl_utils.parser.cwl_v1_0.File class method) (cwl_utils.parser.cwl_v1_0.InitialWorkDirRequirement class method) (cwl_utils.parser.cwl_v1_0.InlineJavascriptRequirement class method) (cwl_utils.parser.cwl_v1_0.InplaceUpdateRequirement class method) (cwl_utils.parser.cwl_v1_0.InputArraySchema class method) (cwl_utils.parser.cwl_v1_0.InputEnumSchema class method) (cwl_utils.parser.cwl_v1_0.InputParameter class method) (cwl_utils.parser.cwl_v1_0.InputRecordField class method) (cwl_utils.parser.cwl_v1_0.InputRecordSchema class method) (cwl_utils.parser.cwl_v1_0.LoadListingRequirement class method) (cwl_utils.parser.cwl_v1_0.MapSchema class method) (cwl_utils.parser.cwl_v1_0.MPIRequirement class method) (cwl_utils.parser.cwl_v1_0.MultipleInputFeatureRequirement class method) (cwl_utils.parser.cwl_v1_0.NetworkAccess class method) (cwl_utils.parser.cwl_v1_0.OutputArraySchema class method) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema class method) (cwl_utils.parser.cwl_v1_0.OutputParameter class method) (cwl_utils.parser.cwl_v1_0.OutputRecordField class method) (cwl_utils.parser.cwl_v1_0.OutputRecordSchema class method) (cwl_utils.parser.cwl_v1_0.ProcessGenerator class method) (cwl_utils.parser.cwl_v1_0.RecordField class method) (cwl_utils.parser.cwl_v1_0.RecordSchema class method) (cwl_utils.parser.cwl_v1_0.ResourceRequirement class method) (cwl_utils.parser.cwl_v1_0.Saveable class method) (cwl_utils.parser.cwl_v1_0.ScatterFeatureRequirement class method) (cwl_utils.parser.cwl_v1_0.SchemaDefRequirement class method) (cwl_utils.parser.cwl_v1_0.Secrets class method) (cwl_utils.parser.cwl_v1_0.ShellCommandRequirement class method) (cwl_utils.parser.cwl_v1_0.ShmSize class method) (cwl_utils.parser.cwl_v1_0.SoftwarePackage class method) (cwl_utils.parser.cwl_v1_0.SoftwareRequirement class method) (cwl_utils.parser.cwl_v1_0.StepInputExpressionRequirement class method) (cwl_utils.parser.cwl_v1_0.SubworkflowFeatureRequirement class method) (cwl_utils.parser.cwl_v1_0.TimeLimit class method) (cwl_utils.parser.cwl_v1_0.UnionSchema class method) (cwl_utils.parser.cwl_v1_0.Workflow class method) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter class method) (cwl_utils.parser.cwl_v1_0.WorkflowStep class method) (cwl_utils.parser.cwl_v1_0.WorkflowStepInput class method) (cwl_utils.parser.cwl_v1_0.WorkflowStepOutput class method) (cwl_utils.parser.cwl_v1_0.WorkReuse class method) (cwl_utils.parser.cwl_v1_1.ArraySchema class method) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema class method) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema class method) (cwl_utils.parser.cwl_v1_1.CommandInputParameter class method) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField class method) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema class method) (cwl_utils.parser.cwl_v1_1.CommandLineBinding class method) (cwl_utils.parser.cwl_v1_1.CommandLineTool class method) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema class method) (cwl_utils.parser.cwl_v1_1.CommandOutputBinding class method) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema class method) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter class method) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField class method) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema class method) (cwl_utils.parser.cwl_v1_1.CUDARequirement class method) (cwl_utils.parser.cwl_v1_1.CWLArraySchema class method) (cwl_utils.parser.cwl_v1_1.CWLRecordField class method) (cwl_utils.parser.cwl_v1_1.CWLRecordSchema class method) (cwl_utils.parser.cwl_v1_1.Directory class method) (cwl_utils.parser.cwl_v1_1.Dirent class method) (cwl_utils.parser.cwl_v1_1.DockerRequirement class method) (cwl_utils.parser.cwl_v1_1.EnumSchema class method) (cwl_utils.parser.cwl_v1_1.EnvironmentDef class method) (cwl_utils.parser.cwl_v1_1.EnvVarRequirement class method) (cwl_utils.parser.cwl_v1_1.ExpressionTool class method) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter class method) (cwl_utils.parser.cwl_v1_1.File class method) (cwl_utils.parser.cwl_v1_1.InitialWorkDirRequirement class method) (cwl_utils.parser.cwl_v1_1.InlineJavascriptRequirement class method) (cwl_utils.parser.cwl_v1_1.InplaceUpdateRequirement class method) (cwl_utils.parser.cwl_v1_1.InputArraySchema class method) (cwl_utils.parser.cwl_v1_1.InputBinding class method) (cwl_utils.parser.cwl_v1_1.InputEnumSchema class method) (cwl_utils.parser.cwl_v1_1.InputRecordField class method) (cwl_utils.parser.cwl_v1_1.InputRecordSchema class method) (cwl_utils.parser.cwl_v1_1.LoadListingRequirement class method) (cwl_utils.parser.cwl_v1_1.MapSchema class method) (cwl_utils.parser.cwl_v1_1.MPIRequirement class method) (cwl_utils.parser.cwl_v1_1.MultipleInputFeatureRequirement class method) (cwl_utils.parser.cwl_v1_1.NetworkAccess class method) (cwl_utils.parser.cwl_v1_1.OutputArraySchema class method) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema class method) (cwl_utils.parser.cwl_v1_1.OutputRecordField class method) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema class method) (cwl_utils.parser.cwl_v1_1.ProcessGenerator class method) (cwl_utils.parser.cwl_v1_1.RecordField class method) (cwl_utils.parser.cwl_v1_1.RecordSchema class method) (cwl_utils.parser.cwl_v1_1.ResourceRequirement class method) (cwl_utils.parser.cwl_v1_1.Saveable class method) (cwl_utils.parser.cwl_v1_1.ScatterFeatureRequirement class method) (cwl_utils.parser.cwl_v1_1.SchemaDefRequirement class method) (cwl_utils.parser.cwl_v1_1.SecondaryFileSchema class method) (cwl_utils.parser.cwl_v1_1.Secrets class method) (cwl_utils.parser.cwl_v1_1.ShellCommandRequirement class method) (cwl_utils.parser.cwl_v1_1.ShmSize class method) (cwl_utils.parser.cwl_v1_1.SoftwarePackage class method) (cwl_utils.parser.cwl_v1_1.SoftwareRequirement class method) (cwl_utils.parser.cwl_v1_1.StepInputExpressionRequirement class method) (cwl_utils.parser.cwl_v1_1.SubworkflowFeatureRequirement class method) (cwl_utils.parser.cwl_v1_1.ToolTimeLimit class method) (cwl_utils.parser.cwl_v1_1.UnionSchema class method) (cwl_utils.parser.cwl_v1_1.Workflow class method) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter class method) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter class method) (cwl_utils.parser.cwl_v1_1.WorkflowStep class method) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput class method) (cwl_utils.parser.cwl_v1_1.WorkflowStepOutput class method) (cwl_utils.parser.cwl_v1_1.WorkReuse class method) (cwl_utils.parser.cwl_v1_2.ArraySchema class method) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema class method) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema class method) (cwl_utils.parser.cwl_v1_2.CommandInputParameter class method) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField class method) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema class method) (cwl_utils.parser.cwl_v1_2.CommandLineBinding class method) (cwl_utils.parser.cwl_v1_2.CommandLineTool class method) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema class method) (cwl_utils.parser.cwl_v1_2.CommandOutputBinding class method) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema class method) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter class method) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField class method) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema class method) (cwl_utils.parser.cwl_v1_2.CUDARequirement class method) (cwl_utils.parser.cwl_v1_2.CWLArraySchema class method) (cwl_utils.parser.cwl_v1_2.CWLRecordField class method) (cwl_utils.parser.cwl_v1_2.CWLRecordSchema class method) (cwl_utils.parser.cwl_v1_2.Directory class method) (cwl_utils.parser.cwl_v1_2.Dirent class method) (cwl_utils.parser.cwl_v1_2.DockerRequirement class method) (cwl_utils.parser.cwl_v1_2.EnumSchema class method) (cwl_utils.parser.cwl_v1_2.EnvironmentDef class method) (cwl_utils.parser.cwl_v1_2.EnvVarRequirement class method) (cwl_utils.parser.cwl_v1_2.ExpressionTool class method) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter class method) (cwl_utils.parser.cwl_v1_2.File class method) (cwl_utils.parser.cwl_v1_2.InitialWorkDirRequirement class method) (cwl_utils.parser.cwl_v1_2.InlineJavascriptRequirement class method) (cwl_utils.parser.cwl_v1_2.InplaceUpdateRequirement class method) (cwl_utils.parser.cwl_v1_2.InputArraySchema class method) (cwl_utils.parser.cwl_v1_2.InputBinding class method) (cwl_utils.parser.cwl_v1_2.InputEnumSchema class method) (cwl_utils.parser.cwl_v1_2.InputRecordField class method) (cwl_utils.parser.cwl_v1_2.InputRecordSchema class method) (cwl_utils.parser.cwl_v1_2.LoadListingRequirement class method) (cwl_utils.parser.cwl_v1_2.Loop class method) (cwl_utils.parser.cwl_v1_2.LoopInput class method) (cwl_utils.parser.cwl_v1_2.MapSchema class method) (cwl_utils.parser.cwl_v1_2.MPIRequirement class method) (cwl_utils.parser.cwl_v1_2.MultipleInputFeatureRequirement class method) (cwl_utils.parser.cwl_v1_2.NetworkAccess class method) (cwl_utils.parser.cwl_v1_2.Operation class method) (cwl_utils.parser.cwl_v1_2.OperationInputParameter class method) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter class method) (cwl_utils.parser.cwl_v1_2.OutputArraySchema class method) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema class method) (cwl_utils.parser.cwl_v1_2.OutputRecordField class method) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema class method) (cwl_utils.parser.cwl_v1_2.ProcessGenerator class method) (cwl_utils.parser.cwl_v1_2.RecordField class method) (cwl_utils.parser.cwl_v1_2.RecordSchema class method) (cwl_utils.parser.cwl_v1_2.ResourceRequirement class method) (cwl_utils.parser.cwl_v1_2.Saveable class method) (cwl_utils.parser.cwl_v1_2.ScatterFeatureRequirement class method) (cwl_utils.parser.cwl_v1_2.SchemaDefRequirement class method) (cwl_utils.parser.cwl_v1_2.SecondaryFileSchema class method) (cwl_utils.parser.cwl_v1_2.Secrets class method) (cwl_utils.parser.cwl_v1_2.ShellCommandRequirement class method) (cwl_utils.parser.cwl_v1_2.ShmSize class method) (cwl_utils.parser.cwl_v1_2.SoftwarePackage class method) (cwl_utils.parser.cwl_v1_2.SoftwareRequirement class method) (cwl_utils.parser.cwl_v1_2.StepInputExpressionRequirement class method) (cwl_utils.parser.cwl_v1_2.SubworkflowFeatureRequirement class method) (cwl_utils.parser.cwl_v1_2.ToolTimeLimit class method) (cwl_utils.parser.cwl_v1_2.UnionSchema class method) (cwl_utils.parser.cwl_v1_2.Workflow class method) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter class method) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter class method) (cwl_utils.parser.cwl_v1_2.WorkflowStep class method) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput class method) (cwl_utils.parser.cwl_v1_2.WorkflowStepOutput class method) (cwl_utils.parser.cwl_v1_2.WorkReuse class method)

G

generate_definition_from_schema() (in module cwl_utils.inputs_schema_gen) generate_etool_from_expr() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) generate_etool_from_expr2() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) generate_json_schema_property_from_input_parameter() (in module cwl_utils.inputs_schema_gen) generate_type_dict() (cwl_utils.inputs_schema_gen.JSONSchemaProperty method) generate_type_dict_from_type() (cwl_utils.inputs_schema_gen.JSONSchemaProperty method) generate_type_dict_from_type_list() (cwl_utils.inputs_schema_gen.JSONSchemaProperty method) generate_udocker_loading_command() (cwl_utils.image_puller.DockerImagePuller method) get_cwl_url() (in module cwl_utils.inputs_schema_gen) get_data() (in module cwl_utils.tests.util) get_expression() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) get_image_name() (cwl_utils.image_puller.DockerImagePuller method) (cwl_utils.image_puller.ImagePuller method) (cwl_utils.image_puller.SingularityImagePuller method)

get_inner_dict() (in module cwl_utils.pack) get_input_for_id() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) get_is_required_from_input_parameter() (in module cwl_utils.inputs_schema_gen) get_js_engine() (in module cwl_utils.sandboxjs) get_path() (in module cwl_utils.tests.util) get_process_from_step() (in module cwl_utils.cite_extract) (in module cwl_utils.docker_extract) get_property_dependencies() (in module cwl_utils.inputs_schema_gen) get_value_from_uri() (in module cwl_utils.utils) get_version() (in module cwl_utils.singularity) glob (cwl_utils.parser.cwl_v1_0.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputBinding attribute) graph (cwl_utils.parser.cwl_v1_0.LoadingOptions property) (cwl_utils.parser.cwl_v1_1.LoadingOptions property) (cwl_utils.parser.cwl_v1_2.LoadingOptions property) graph_split() (in module cwl_utils.graph_split) GraphTargetMissingException, [1] GX (in module cwl_utils.tests.test_format)

H

have_node_slim (cwl_utils.sandboxjs.NodeJSEngine attribute) hide_nodejs() (in module cwl_utils.tests.test_js_sandbox) hints (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute)

I

id (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.OutputParameter attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStepOutput attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepOutput attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.LoopInput attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepOutput attribute) Identified (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) IdentifierRequired (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) idmap_envDef_array_of_EnvironmentDefLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_fields_union_of_None_type_or_array_of_CommandInputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_fields_union_of_None_type_or_array_of_CommandOutputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_fields_union_of_None_type_or_array_of_CWLRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_fields_union_of_None_type_or_array_of_InputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_fields_union_of_None_type_or_array_of_OutputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_fields_union_of_None_type_or_array_of_RecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_hints_union_of_None_type_or_array_of_Any_type (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_hints_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_LoadListingRequirementLoader_or_InplaceUpdateRequirementLoader_or_SecretsLoader_or_TimeLimitLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_0) idmap_hints_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_2) idmap_hints_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_1) idmap_in__array_of_WorkflowStepInputLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_inputs_array_of_CommandInputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_inputs_array_of_InputParameterLoader (in module cwl_utils.parser.cwl_v1_0) idmap_inputs_array_of_OperationInputParameterLoader (in module cwl_utils.parser.cwl_v1_2) idmap_inputs_array_of_union_of_CommandInputParameterLoader_or_WorkflowInputParameterLoader (in module cwl_utils.parser.cwl_v1_1) idmap_inputs_array_of_union_of_CommandInputParameterLoader_or_WorkflowInputParameterLoader_or_OperationInputParameterLoader (in module cwl_utils.parser.cwl_v1_2) idmap_inputs_array_of_WorkflowInputParameterLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_loop_array_of_LoopInputLoader (in module cwl_utils.parser.cwl_v1_2) idmap_outputs_array_of_CommandOutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_outputs_array_of_ExpressionToolOutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_outputs_array_of_OperationOutputParameterLoader (in module cwl_utils.parser.cwl_v1_2) idmap_outputs_array_of_OutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) idmap_outputs_array_of_union_of_CommandOutputParameterLoader_or_ExpressionToolOutputParameterLoader_or_WorkflowOutputParameterLoader (in module cwl_utils.parser.cwl_v1_1) idmap_outputs_array_of_union_of_CommandOutputParameterLoader_or_ExpressionToolOutputParameterLoader_or_WorkflowOutputParameterLoader_or_OperationOutputParameterLoader (in module cwl_utils.parser.cwl_v1_2) idmap_outputs_array_of_WorkflowOutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_packages_array_of_SoftwarePackageLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idmap_requirements_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_LoadListingRequirementLoader_or_InplaceUpdateRequirementLoader_or_SecretsLoader_or_TimeLimitLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_0) idmap_requirements_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_2) idmap_requirements_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_1) idmap_steps_union_of_array_of_WorkflowStepLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) idx (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) IdxType (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ImagePuller (class in cwl_utils.image_puller) imports (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) in_ (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) includes (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) InitialWorkDirRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) InitialWorkDirRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) InitialWorkDirRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) inline_types() (in module cwl_utils.schemadef) InlineJavascriptRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) InlineJavascriptRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) InlineJavascriptRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) inplaceUpdate (cwl_utils.parser.cwl_v1_0.InplaceUpdateRequirement attribute) (cwl_utils.parser.cwl_v1_1.InplaceUpdateRequirement attribute) (cwl_utils.parser.cwl_v1_2.InplaceUpdateRequirement attribute)

InplaceUpdateRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) InplaceUpdateRequirement_classLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) InplaceUpdateRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) input cwl-cite-extract command line option cwl-docker-extract command line option InputArraySchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) InputArraySchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) InputArraySchemaTypes (in module cwl_utils.parser) InputBinding (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) inputBinding (cwl_utils.parser.cwl_v1_0.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_0.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) InputBindingLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) InputEnumSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) InputEnumSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) InputEnumSchemaTypes (in module cwl_utils.parser) InputFormat (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) InputParameter (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) InputParameterLoader (in module cwl_utils.parser.cwl_v1_0) InputRecordField (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) InputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) InputRecordSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) InputRecordSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) InputRecordSchemaTypes (in module cwl_utils.parser) inputs cwl-expression-refactor command line option cwl-normalizer command line option inputs (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) (cwl_utils.types.CWLParameterContext attribute) InputSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) InputType (in module cwl_utils.inputs_schema_gen) intent (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) interpolate() (in module cwl_utils.expression) inttype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) IOSchema (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) is_apptainer_1_or_newer() (in module cwl_utils.singularity) is_cwl_parameter_context_key() (in module cwl_utils.types) is_directory() (in module cwl_utils.types) is_directory_key() (in module cwl_utils.types) is_file() (in module cwl_utils.types) is_file_key() (in module cwl_utils.types) is_file_or_directory() (in module cwl_utils.types) is_local_uri() (in module cwl_utils.utils) is_process() (in module cwl_utils.parser) is_uri() (in module cwl_utils.utils) is_version_2_6() (in module cwl_utils.singularity) is_version_3_1_or_newer() (in module cwl_utils.singularity) is_version_3_4_or_newer() (in module cwl_utils.singularity) is_version_3_or_newer() (in module cwl_utils.singularity) items (cwl_utils.parser.cwl_v1_0.ArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CWLArraySchema attribute) (cwl_utils.parser.cwl_v1_0.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.ArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CWLArraySchema attribute) (cwl_utils.parser.cwl_v1_1.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.ArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CWLArraySchema attribute) (cwl_utils.parser.cwl_v1_2.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.OutputArraySchema attribute) itemSeparator (cwl_utils.parser.cwl_v1_0.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandLineBinding attribute)

J

JavascriptException JSEngine (class in cwl_utils.sandboxjs)

jshead() (in module cwl_utils.expression) json_dump() (in module cwl_utils.graph_split) JSONSchemaProperty (class in cwl_utils.inputs_schema_gen)

L

label (cwl_utils.parser.cwl_v1_0.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputRecordField attribute) (cwl_utils.parser.cwl_v1_0.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputParameter attribute) (cwl_utils.parser.cwl_v1_0.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) Labeled (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) linenum() (in module cwl_utils.sandboxjs) linkMerge (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_0_utils.SrcSink attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_1_utils.SrcSink attribute) (cwl_utils.parser.cwl_v1_2.LoopInput attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_2_utils.SrcSink attribute) LinkMergeMethodLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) listify_everything() (in module cwl_utils.pack) listing (cwl_utils.parser.cwl_v1_0.Directory attribute) (cwl_utils.parser.cwl_v1_0.InitialWorkDirRequirement attribute) (cwl_utils.parser.cwl_v1_1.Directory attribute) (cwl_utils.parser.cwl_v1_1.InitialWorkDirRequirement attribute) (cwl_utils.parser.cwl_v1_2.Directory attribute) (cwl_utils.parser.cwl_v1_2.InitialWorkDirRequirement attribute) load_document() (in module cwl_utils.parser) (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2)

load_document_by_string() (in module cwl_utils.parser) (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) load_document_by_uri() (in module cwl_utils.parser) load_document_by_yaml() (in module cwl_utils.parser) (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) load_document_with_metadata() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) load_field() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) load_inputfile() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) (in module cwl_utils.parser.utils) load_inputfile_by_string() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) (in module cwl_utils.parser.utils) load_inputfile_by_uri() (in module cwl_utils.parser.utils) load_inputfile_by_yaml() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) (in module cwl_utils.parser.utils) load_linked_file() (in module cwl_utils.utils) load_schemadefs() (in module cwl_utils.pack) load_step() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) (in module cwl_utils.parser.utils) LoadContents (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) loadContents (cwl_utils.parser.cwl_v1_0.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_1.InputBinding attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_2.InputBinding attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) LoadContents (in module cwl_utils.parser) LoadingOptions (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) loadListing (cwl_utils.parser.cwl_v1_0.LoadListingRequirement attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.LoadListingRequirement attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.LoadListingRequirement attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) LoadListingEnumLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) LoadListingRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) LoadListingRequirement_classLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) LoadListingRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) localdata (cwl_utils.sandboxjs.NodeJSEngine attribute) location (cwl_utils.parser.cwl_v1_0.Directory attribute) (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_1.Directory attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_2.Directory attribute) (cwl_utils.parser.cwl_v1_2.File attribute) logger (in module cwl_utils.pack) Loop (class in cwl_utils.parser.cwl_v1_2) loop (cwl_utils.parser.cwl_v1_2.Loop attribute) LoopInput (class in cwl_utils.parser.cwl_v1_2) LoopInputLoader (in module cwl_utils.parser.cwl_v1_2) LoopLoader (in module cwl_utils.parser.cwl_v1_2) LoopOutputModesLoader (in module cwl_utils.parser.cwl_v1_2) loopSource (cwl_utils.parser.cwl_v1_2.LoopInput attribute) loopWhen (cwl_utils.parser.cwl_v1_2.Loop attribute) LoopWorkflowStep (in module cwl_utils.parser)

M

main() (in module cwl_utils.cite_extract) (in module cwl_utils.docker_extract) (in module cwl_utils.expression_refactor) (in module cwl_utils.graph_split) (in module cwl_utils.inputs_schema_gen) (in module cwl_utils.normalizer) Map_nameLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) map_of_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader_or_CWLObjectTypeLoader (in module cwl_utils.parser.cwl_v1_2) map_of_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_CWLObjectTypeLoader (in module cwl_utils.parser.cwl_v1_1) map_of_union_of_None_type_or_CWLObjectTypeLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) MapSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) MapSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) merge_flatten_type() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) message (cwl_utils.parser.cwl_v1_0_utils.SrcSink attribute) (cwl_utils.parser.cwl_v1_1_utils.SrcSink attribute) (cwl_utils.parser.cwl_v1_2_utils.SrcSink attribute) minimum_node_version_str (cwl_utils.sandboxjs.NodeJSEngine attribute) MissingKeyField MissingTypeName module cwl_utils cwl_utils.__meta__ cwl_utils.cite_extract cwl_utils.cwl_v1_0_expression_refactor cwl_utils.cwl_v1_1_expression_refactor cwl_utils.cwl_v1_2_expression_refactor cwl_utils.docker_extract cwl_utils.errors cwl_utils.expression cwl_utils.expression_refactor cwl_utils.file_formats cwl_utils.graph_split cwl_utils.image_puller cwl_utils.inputs_schema_gen cwl_utils.loghandler cwl_utils.normalizer cwl_utils.pack cwl_utils.parser cwl_utils.parser.cwl_v1_0 cwl_utils.parser.cwl_v1_0_utils cwl_utils.parser.cwl_v1_1 cwl_utils.parser.cwl_v1_1_utils cwl_utils.parser.cwl_v1_2 cwl_utils.parser.cwl_v1_2_utils cwl_utils.parser.latest cwl_utils.parser.utils cwl_utils.sandboxjs cwl_utils.schemadef cwl_utils.singularity cwl_utils.tests cwl_utils.tests.load_cwl_by_path cwl_utils.tests.test_cite_extract cwl_utils.tests.test_docker_extract cwl_utils.tests.test_etools_to_clt cwl_utils.tests.test_examples cwl_utils.tests.test_extensions cwl_utils.tests.test_format cwl_utils.tests.test_graph_split cwl_utils.tests.test_inputs_schema_gen cwl_utils.tests.test_js_sandbox cwl_utils.tests.test_meta cwl_utils.tests.test_packing cwl_utils.tests.test_parser cwl_utils.tests.test_parser_utils cwl_utils.tests.test_subscope cwl_utils.tests.test_utils cwl_utils.tests.util cwl_utils.types cwl_utils.utils

MPIRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) MPIRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) MultipleInputFeatureRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) MultipleInputFeatureRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) MultipleInputFeatureRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2)

N

name (cwl_utils.inputs_schema_gen.JSONSchemaProperty attribute) (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_0.EnumSchema attribute) (cwl_utils.parser.cwl_v1_0.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.InputRecordField attribute) (cwl_utils.parser.cwl_v1_0.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.RecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_1.EnumSchema attribute) (cwl_utils.parser.cwl_v1_1.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.RecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_2.EnumSchema attribute) (cwl_utils.parser.cwl_v1_2.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.RecordField attribute)

nameext (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_2.File attribute) nameroot (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_2.File attribute) names (cwl_utils.parser.cwl_v1_0.UnionSchema attribute) (cwl_utils.parser.cwl_v1_1.UnionSchema attribute) (cwl_utils.parser.cwl_v1_2.UnionSchema attribute) namespaces (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) needs_docker (in module cwl_utils.tests.util) needs_parsing() (in module cwl_utils.expression) needs_podman (in module cwl_utils.tests.util) needs_singularity (in module cwl_utils.tests.util) needs_udocker (in module cwl_utils.tests.util) NetworkAccess (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) networkAccess (cwl_utils.parser.cwl_v1_0.NetworkAccess attribute) (cwl_utils.parser.cwl_v1_1.NetworkAccess attribute) (cwl_utils.parser.cwl_v1_2.NetworkAccess attribute) NetworkAccess_classLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) NetworkAccessLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) NEW_CHAR (cwl_utils.image_puller.SingularityImagePuller attribute) new_js_proc() (cwl_utils.sandboxjs.NodeJSEngine method) (in module cwl_utils.sandboxjs) no_link_check (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) node_versions (in module cwl_utils.tests.test_js_sandbox) NodeJSEngine (class in cwl_utils.sandboxjs) None_type (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) normalize_sources() (in module cwl_utils.pack) normalize_to_list() (in module cwl_utils.utils) normalize_to_map() (in module cwl_utils.utils) NoType (class in cwl_utils.parser)

O

OLD_ESCAPE_CWL_VERSIONS (in module cwl_utils.expression) Operation (class in cwl_utils.parser.cwl_v1_2) Operation_classLoader (in module cwl_utils.parser.cwl_v1_2) OperationInputParameter (class in cwl_utils.parser.cwl_v1_2) OperationInputParameterLoader (in module cwl_utils.parser.cwl_v1_2) OperationLoader (in module cwl_utils.parser.cwl_v1_2) OperationOutputParameter (class in cwl_utils.parser.cwl_v1_2) OperationOutputParameterLoader (in module cwl_utils.parser.cwl_v1_2) original_doc (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) out (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) outdir (cwl_utils.types.CWLRuntimeParameterContext attribute) outdirMax (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) outdirMin (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) outdirSize (cwl_utils.types.CWLRuntimeParameterContext attribute) OutputArraySchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) OutputArraySchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) OutputBinding (class in cwl_utils.parser.cwl_v1_0) outputBinding (cwl_utils.parser.cwl_v1_0.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputParameter attribute) (cwl_utils.parser.cwl_v1_0.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField attribute) OutputEnumSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser)

OutputEnumSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) outputEval (cwl_utils.parser.cwl_v1_0.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputBinding attribute) OutputFormat (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) outputMethod (cwl_utils.parser.cwl_v1_2.Loop attribute) OutputParameter (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) OutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) OutputRecordField (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) OutputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) OutputRecordSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) OutputRecordSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) outputs (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) OutputSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) outputSource (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute)

P

pack() (in module cwl_utils.pack) pack_process() (in module cwl_utils.pack) package (cwl_utils.parser.cwl_v1_0.SoftwarePackage attribute) (cwl_utils.parser.cwl_v1_1.SoftwarePackage attribute) (cwl_utils.parser.cwl_v1_2.SoftwarePackage attribute) packages (cwl_utils.parser.cwl_v1_0.SoftwareRequirement attribute) (cwl_utils.parser.cwl_v1_1.SoftwareRequirement attribute) (cwl_utils.parser.cwl_v1_2.SoftwareRequirement attribute) param_for_source_id() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) (in module cwl_utils.parser.utils) param_re (in module cwl_utils.sandboxjs) param_str (in module cwl_utils.sandboxjs) Parameter (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) PAREN (cwl_utils.expression.t attribute) parse_args() (in module cwl_utils.expression_refactor) (in module cwl_utils.inputs_schema_gen) (in module cwl_utils.normalizer) parse_errors() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) parser_info() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) path (cwl_utils.parser.cwl_v1_0.Directory attribute) (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_1.Directory attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_2.Directory attribute) (cwl_utils.parser.cwl_v1_2.File attribute) pattern (cwl_utils.parser.cwl_v1_1.SecondaryFileSchema attribute) (cwl_utils.parser.cwl_v1_2.SecondaryFileSchema attribute) permanentFailCodes (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) pickValue (cwl_utils.parser.cwl_v1_2.LoopInput attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) PICKVALUE_ALL_NON_NULL_EXPR (in module cwl_utils.cwl_v1_2_expression_refactor) PICKVALUE_ERROR (in module cwl_utils.cwl_v1_2_expression_refactor) PICKVALUE_FIRST_NON_NULL_EXPR (in module cwl_utils.cwl_v1_2_expression_refactor)

PICKVALUE_THE_ONLY_NON_NULL_EXPR (in module cwl_utils.cwl_v1_2_expression_refactor) PickValueMethodLoader (in module cwl_utils.parser.cwl_v1_2) position (cwl_utils.parser.cwl_v1_0.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandLineBinding attribute) prefix (cwl_utils.parser.cwl_v1_0.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandLineBinding attribute) prefix_url() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) PRIMITIVE_TYPES_MAPPING (in module cwl_utils.inputs_schema_gen) PrimitiveTypeLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) Process (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) process_finished_str (cwl_utils.sandboxjs.NodeJSEngine attribute) process_level_reqs() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) process_software_requirement() (in module cwl_utils.cite_extract) process_workflow_inputs_and_outputs() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) process_workflow_reqs_and_hints() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) processes (cwl_utils.parser.cwl_v1_0.MPIRequirement attribute) (cwl_utils.parser.cwl_v1_1.MPIRequirement attribute) (cwl_utils.parser.cwl_v1_2.MPIRequirement attribute) processes_to_kill (cwl_utils.sandboxjs.NodeJSEngine attribute) ProcessGenerator (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) ProcessGeneratorLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ProcessRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) ProcessRequirementTypes (in module cwl_utils.parser)

R

ram (cwl_utils.types.CWLRuntimeParameterContext attribute) ramMax (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) ramMin (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) Record_nameLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) RecordField (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) RecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) RecordMissingFields RecordSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) RecordSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) refactor() (in module cwl_utils.expression_refactor) regex_eval() (cwl_utils.sandboxjs.JSEngine method) (cwl_utils.sandboxjs.NodeJSEngine method) remove_JSReq() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) rename_step_source() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) replace_clt_hintreq_expr_with_etool() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) replace_expr_with_etool() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) replace_step_clt_expr_with_etool() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) replace_step_valueFrom_expr_with_etool() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) replace_step_when_expr_with_etool() (in module cwl_utils.cwl_v1_2_expression_refactor) replace_wf_input_ref_with_step_output() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) req (cwl_utils.image_puller.ImagePuller attribute) required (cwl_utils.inputs_schema_gen.JSONSchemaProperty attribute) (cwl_utils.parser.cwl_v1_1.SecondaryFileSchema attribute) (cwl_utils.parser.cwl_v1_2.SecondaryFileSchema attribute)

requirements (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_0.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.ExpressionTool attribute) (cwl_utils.parser.cwl_v1_2.Operation attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) resolve_imports() (in module cwl_utils.pack) resolve_schemadefs() (in module cwl_utils.pack) resolve_steps() (in module cwl_utils.pack) resolved_path() (in module cwl_utils.utils) ResourceRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) ResourceRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ResourceRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) rewrite() (in module cwl_utils.graph_split) rewrite_id() (in module cwl_utils.graph_split) rewrite_import() (in module cwl_utils.graph_split) rewrite_schemadef() (in module cwl_utils.graph_split) rewrite_types() (in module cwl_utils.graph_split) run (cwl_utils.parser.cwl_v1_0.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.ProcessGenerator attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) run() (in module cwl_utils.cite_extract) (in module cwl_utils.docker_extract) (in module cwl_utils.expression_refactor) (in module cwl_utils.graph_split) (in module cwl_utils.inputs_schema_gen) (in module cwl_utils.normalizer) runtime (cwl_utils.types.CWLParameterContext attribute) rvocab (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute)

S

sanitise_schema_field() (in module cwl_utils.utils) save() (cwl_utils.parser.cwl_v1_0.ArraySchema method) (cwl_utils.parser.cwl_v1_0.CommandInputArraySchema method) (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema method) (cwl_utils.parser.cwl_v1_0.CommandInputParameter method) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField method) (cwl_utils.parser.cwl_v1_0.CommandInputRecordSchema method) (cwl_utils.parser.cwl_v1_0.CommandLineBinding method) (cwl_utils.parser.cwl_v1_0.CommandLineTool method) (cwl_utils.parser.cwl_v1_0.CommandOutputArraySchema method) (cwl_utils.parser.cwl_v1_0.CommandOutputBinding method) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema method) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter method) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordField method) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordSchema method) (cwl_utils.parser.cwl_v1_0.CUDARequirement method) (cwl_utils.parser.cwl_v1_0.CWLArraySchema method) (cwl_utils.parser.cwl_v1_0.CWLRecordField method) (cwl_utils.parser.cwl_v1_0.CWLRecordSchema method) (cwl_utils.parser.cwl_v1_0.Directory method) (cwl_utils.parser.cwl_v1_0.Dirent method) (cwl_utils.parser.cwl_v1_0.DockerRequirement method) (cwl_utils.parser.cwl_v1_0.EnumSchema method) (cwl_utils.parser.cwl_v1_0.EnvironmentDef method) (cwl_utils.parser.cwl_v1_0.EnvVarRequirement method) (cwl_utils.parser.cwl_v1_0.ExpressionTool method) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter method) (cwl_utils.parser.cwl_v1_0.File method) (cwl_utils.parser.cwl_v1_0.InitialWorkDirRequirement method) (cwl_utils.parser.cwl_v1_0.InlineJavascriptRequirement method) (cwl_utils.parser.cwl_v1_0.InplaceUpdateRequirement method) (cwl_utils.parser.cwl_v1_0.InputArraySchema method) (cwl_utils.parser.cwl_v1_0.InputEnumSchema method) (cwl_utils.parser.cwl_v1_0.InputParameter method) (cwl_utils.parser.cwl_v1_0.InputRecordField method) (cwl_utils.parser.cwl_v1_0.InputRecordSchema method) (cwl_utils.parser.cwl_v1_0.LoadListingRequirement method) (cwl_utils.parser.cwl_v1_0.MapSchema method) (cwl_utils.parser.cwl_v1_0.MPIRequirement method) (cwl_utils.parser.cwl_v1_0.MultipleInputFeatureRequirement method) (cwl_utils.parser.cwl_v1_0.NetworkAccess method) (cwl_utils.parser.cwl_v1_0.OutputArraySchema method) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema method) (cwl_utils.parser.cwl_v1_0.OutputParameter method) (cwl_utils.parser.cwl_v1_0.OutputRecordField method) (cwl_utils.parser.cwl_v1_0.OutputRecordSchema method) (cwl_utils.parser.cwl_v1_0.ProcessGenerator method) (cwl_utils.parser.cwl_v1_0.RecordField method) (cwl_utils.parser.cwl_v1_0.RecordSchema method) (cwl_utils.parser.cwl_v1_0.ResourceRequirement method) (cwl_utils.parser.cwl_v1_0.Saveable method) (cwl_utils.parser.cwl_v1_0.ScatterFeatureRequirement method) (cwl_utils.parser.cwl_v1_0.SchemaDefRequirement method) (cwl_utils.parser.cwl_v1_0.Secrets method) (cwl_utils.parser.cwl_v1_0.ShellCommandRequirement method) (cwl_utils.parser.cwl_v1_0.ShmSize method) (cwl_utils.parser.cwl_v1_0.SoftwarePackage method) (cwl_utils.parser.cwl_v1_0.SoftwareRequirement method) (cwl_utils.parser.cwl_v1_0.StepInputExpressionRequirement method) (cwl_utils.parser.cwl_v1_0.SubworkflowFeatureRequirement method) (cwl_utils.parser.cwl_v1_0.TimeLimit method) (cwl_utils.parser.cwl_v1_0.UnionSchema method) (cwl_utils.parser.cwl_v1_0.Workflow method) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter method) (cwl_utils.parser.cwl_v1_0.WorkflowStep method) (cwl_utils.parser.cwl_v1_0.WorkflowStepInput method) (cwl_utils.parser.cwl_v1_0.WorkflowStepOutput method) (cwl_utils.parser.cwl_v1_0.WorkReuse method) (cwl_utils.parser.cwl_v1_1.ArraySchema method) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema method) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema method) (cwl_utils.parser.cwl_v1_1.CommandInputParameter method) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField method) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema method) (cwl_utils.parser.cwl_v1_1.CommandLineBinding method) (cwl_utils.parser.cwl_v1_1.CommandLineTool method) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema method) (cwl_utils.parser.cwl_v1_1.CommandOutputBinding method) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema method) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter method) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField method) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema method) (cwl_utils.parser.cwl_v1_1.CUDARequirement method) (cwl_utils.parser.cwl_v1_1.CWLArraySchema method) (cwl_utils.parser.cwl_v1_1.CWLRecordField method) (cwl_utils.parser.cwl_v1_1.CWLRecordSchema method) (cwl_utils.parser.cwl_v1_1.Directory method) (cwl_utils.parser.cwl_v1_1.Dirent method) (cwl_utils.parser.cwl_v1_1.DockerRequirement method) (cwl_utils.parser.cwl_v1_1.EnumSchema method) (cwl_utils.parser.cwl_v1_1.EnvironmentDef method) (cwl_utils.parser.cwl_v1_1.EnvVarRequirement method) (cwl_utils.parser.cwl_v1_1.ExpressionTool method) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter method) (cwl_utils.parser.cwl_v1_1.File method) (cwl_utils.parser.cwl_v1_1.InitialWorkDirRequirement method) (cwl_utils.parser.cwl_v1_1.InlineJavascriptRequirement method) (cwl_utils.parser.cwl_v1_1.InplaceUpdateRequirement method) (cwl_utils.parser.cwl_v1_1.InputArraySchema method) (cwl_utils.parser.cwl_v1_1.InputBinding method) (cwl_utils.parser.cwl_v1_1.InputEnumSchema method) (cwl_utils.parser.cwl_v1_1.InputRecordField method) (cwl_utils.parser.cwl_v1_1.InputRecordSchema method) (cwl_utils.parser.cwl_v1_1.LoadListingRequirement method) (cwl_utils.parser.cwl_v1_1.MapSchema method) (cwl_utils.parser.cwl_v1_1.MPIRequirement method) (cwl_utils.parser.cwl_v1_1.MultipleInputFeatureRequirement method) (cwl_utils.parser.cwl_v1_1.NetworkAccess method) (cwl_utils.parser.cwl_v1_1.OutputArraySchema method) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema method) (cwl_utils.parser.cwl_v1_1.OutputRecordField method) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema method) (cwl_utils.parser.cwl_v1_1.ProcessGenerator method) (cwl_utils.parser.cwl_v1_1.RecordField method) (cwl_utils.parser.cwl_v1_1.RecordSchema method) (cwl_utils.parser.cwl_v1_1.ResourceRequirement method) (cwl_utils.parser.cwl_v1_1.Saveable method) (cwl_utils.parser.cwl_v1_1.ScatterFeatureRequirement method) (cwl_utils.parser.cwl_v1_1.SchemaDefRequirement method) (cwl_utils.parser.cwl_v1_1.SecondaryFileSchema method) (cwl_utils.parser.cwl_v1_1.Secrets method) (cwl_utils.parser.cwl_v1_1.ShellCommandRequirement method) (cwl_utils.parser.cwl_v1_1.ShmSize method) (cwl_utils.parser.cwl_v1_1.SoftwarePackage method) (cwl_utils.parser.cwl_v1_1.SoftwareRequirement method) (cwl_utils.parser.cwl_v1_1.StepInputExpressionRequirement method) (cwl_utils.parser.cwl_v1_1.SubworkflowFeatureRequirement method) (cwl_utils.parser.cwl_v1_1.ToolTimeLimit method) (cwl_utils.parser.cwl_v1_1.UnionSchema method) (cwl_utils.parser.cwl_v1_1.Workflow method) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter method) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter method) (cwl_utils.parser.cwl_v1_1.WorkflowStep method) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput method) (cwl_utils.parser.cwl_v1_1.WorkflowStepOutput method) (cwl_utils.parser.cwl_v1_1.WorkReuse method) (cwl_utils.parser.cwl_v1_2.ArraySchema method) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema method) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema method) (cwl_utils.parser.cwl_v1_2.CommandInputParameter method) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField method) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema method) (cwl_utils.parser.cwl_v1_2.CommandLineBinding method) (cwl_utils.parser.cwl_v1_2.CommandLineTool method) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema method) (cwl_utils.parser.cwl_v1_2.CommandOutputBinding method) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema method) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter method) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField method) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema method) (cwl_utils.parser.cwl_v1_2.CUDARequirement method) (cwl_utils.parser.cwl_v1_2.CWLArraySchema method) (cwl_utils.parser.cwl_v1_2.CWLRecordField method) (cwl_utils.parser.cwl_v1_2.CWLRecordSchema method) (cwl_utils.parser.cwl_v1_2.Directory method) (cwl_utils.parser.cwl_v1_2.Dirent method) (cwl_utils.parser.cwl_v1_2.DockerRequirement method) (cwl_utils.parser.cwl_v1_2.EnumSchema method) (cwl_utils.parser.cwl_v1_2.EnvironmentDef method) (cwl_utils.parser.cwl_v1_2.EnvVarRequirement method) (cwl_utils.parser.cwl_v1_2.ExpressionTool method) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter method) (cwl_utils.parser.cwl_v1_2.File method) (cwl_utils.parser.cwl_v1_2.InitialWorkDirRequirement method) (cwl_utils.parser.cwl_v1_2.InlineJavascriptRequirement method) (cwl_utils.parser.cwl_v1_2.InplaceUpdateRequirement method) (cwl_utils.parser.cwl_v1_2.InputArraySchema method) (cwl_utils.parser.cwl_v1_2.InputBinding method) (cwl_utils.parser.cwl_v1_2.InputEnumSchema method) (cwl_utils.parser.cwl_v1_2.InputRecordField method) (cwl_utils.parser.cwl_v1_2.InputRecordSchema method) (cwl_utils.parser.cwl_v1_2.LoadListingRequirement method) (cwl_utils.parser.cwl_v1_2.Loop method) (cwl_utils.parser.cwl_v1_2.LoopInput method) (cwl_utils.parser.cwl_v1_2.MapSchema method) (cwl_utils.parser.cwl_v1_2.MPIRequirement method) (cwl_utils.parser.cwl_v1_2.MultipleInputFeatureRequirement method) (cwl_utils.parser.cwl_v1_2.NetworkAccess method) (cwl_utils.parser.cwl_v1_2.Operation method) (cwl_utils.parser.cwl_v1_2.OperationInputParameter method) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter method) (cwl_utils.parser.cwl_v1_2.OutputArraySchema method) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema method) (cwl_utils.parser.cwl_v1_2.OutputRecordField method) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema method) (cwl_utils.parser.cwl_v1_2.ProcessGenerator method) (cwl_utils.parser.cwl_v1_2.RecordField method) (cwl_utils.parser.cwl_v1_2.RecordSchema method) (cwl_utils.parser.cwl_v1_2.ResourceRequirement method) (cwl_utils.parser.cwl_v1_2.Saveable method) (cwl_utils.parser.cwl_v1_2.ScatterFeatureRequirement method) (cwl_utils.parser.cwl_v1_2.SchemaDefRequirement method) (cwl_utils.parser.cwl_v1_2.SecondaryFileSchema method) (cwl_utils.parser.cwl_v1_2.Secrets method) (cwl_utils.parser.cwl_v1_2.ShellCommandRequirement method) (cwl_utils.parser.cwl_v1_2.ShmSize method) (cwl_utils.parser.cwl_v1_2.SoftwarePackage method) (cwl_utils.parser.cwl_v1_2.SoftwareRequirement method) (cwl_utils.parser.cwl_v1_2.StepInputExpressionRequirement method) (cwl_utils.parser.cwl_v1_2.SubworkflowFeatureRequirement method) (cwl_utils.parser.cwl_v1_2.ToolTimeLimit method) (cwl_utils.parser.cwl_v1_2.UnionSchema method) (cwl_utils.parser.cwl_v1_2.Workflow method) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter method) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter method) (cwl_utils.parser.cwl_v1_2.WorkflowStep method) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput method) (cwl_utils.parser.cwl_v1_2.WorkflowStepOutput method) (cwl_utils.parser.cwl_v1_2.WorkReuse method) (in module cwl_utils.parser) (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) save_directory (cwl_utils.image_puller.ImagePuller attribute) save_docker_image() (cwl_utils.image_puller.DockerImagePuller method) (cwl_utils.image_puller.ImagePuller method) (cwl_utils.image_puller.SingularityImagePuller method) save_relative_uri() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) save_type (in module cwl_utils.expression_refactor) (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) save_with_metadata() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) Saveable (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) saveCWL (class in cwl_utils.expression_refactor) saved_obj (in module cwl_utils.tests.load_cwl_by_path) scanner() (in module cwl_utils.expression) scatter (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) ScatterFeatureRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2)

ScatterFeatureRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ScatterFeatureRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) scatterMethod (cwl_utils.parser.cwl_v1_0.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStep attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) ScatterMethodLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ScatterWorkflowStep (in module cwl_utils.parser) SchemaBase (class in cwl_utils.parser.cwl_v1_0) SchemaDefRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) SchemaDefRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) SchemaDefRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) schemas (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute) secondaryFiles (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.OutputParameter attribute) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.File attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) SecondaryFileSchema (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) SecondaryFileSchemaLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) secondaryfilesdsl_union_of_None_type_or_array_of_union_of_FileLoader_or_DirectoryLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) secondaryfilesdsl_union_of_None_type_or_SecondaryFileSchemaLoader_or_array_of_SecondaryFileSchemaLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) Secrets (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) secrets (cwl_utils.parser.cwl_v1_0.Secrets attribute) (cwl_utils.parser.cwl_v1_1.Secrets attribute) (cwl_utils.parser.cwl_v1_2.Secrets attribute) SecretsLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) seg_double (in module cwl_utils.sandboxjs) seg_index (in module cwl_utils.sandboxjs) seg_single (in module cwl_utils.sandboxjs) seg_symbol (in module cwl_utils.sandboxjs) segment_re (in module cwl_utils.sandboxjs) segments (in module cwl_utils.sandboxjs) self (cwl_utils.types.CWLParameterContext attribute) separate (cwl_utils.parser.cwl_v1_0.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandLineBinding attribute) set_js_engine() (in module cwl_utils.sandboxjs) ShellCommandRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) ShellCommandRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ShellCommandRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) shellQuote (cwl_utils.parser.cwl_v1_0.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_1.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_2.CommandLineBinding attribute) ShmSize (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) shmSize (cwl_utils.parser.cwl_v1_0.ShmSize attribute) (cwl_utils.parser.cwl_v1_1.ShmSize attribute) (cwl_utils.parser.cwl_v1_2.ShmSize attribute) ShmSizeLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) shortname() (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) SINGLE_QUOTE (cwl_utils.expression.t attribute) singularity_supports_userns() (in module cwl_utils.utils) SingularityImagePuller (class in cwl_utils.image_puller) Sink (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) sink (cwl_utils.parser.cwl_v1_0_utils.SrcSink attribute) (cwl_utils.parser.cwl_v1_1_utils.SrcSink attribute) (cwl_utils.parser.cwl_v1_2_utils.SrcSink attribute) SinkType (in module cwl_utils.types) size (cwl_utils.parser.cwl_v1_0.File attribute) (cwl_utils.parser.cwl_v1_1.File attribute) (cwl_utils.parser.cwl_v1_2.File attribute) slim_definitions() (in module cwl_utils.inputs_schema_gen) SoftwarePackage (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) SoftwarePackageLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) SoftwareRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) SoftwareRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) SoftwareRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) SoftwareRequirementTypes (in module cwl_utils.parser) source (cwl_utils.parser.cwl_v1_0.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) specs (cwl_utils.parser.cwl_v1_0.SoftwarePackage attribute) (cwl_utils.parser.cwl_v1_1.SoftwarePackage attribute) (cwl_utils.parser.cwl_v1_2.SoftwarePackage attribute) src (cwl_utils.parser.cwl_v1_0_utils.SrcSink attribute) (cwl_utils.parser.cwl_v1_1_utils.SrcSink attribute) (cwl_utils.parser.cwl_v1_2_utils.SrcSink attribute) SrcSink (class in cwl_utils.parser.cwl_v1_0_utils) (class in cwl_utils.parser.cwl_v1_1_utils) (class in cwl_utils.parser.cwl_v1_2_utils) static_checker() (in module cwl_utils.parser.utils) stderr (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) stderrLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) stdfmt() (in module cwl_utils.sandboxjs) stdin (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) stdinLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) stdout (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) stdoutLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) StepInputExpressionRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) StepInputExpressionRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) StepInputExpressionRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) steps (cwl_utils.parser.cwl_v1_0.Workflow attribute) (cwl_utils.parser.cwl_v1_1.Workflow attribute) (cwl_utils.parser.cwl_v1_2.Workflow attribute) streamable (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.OutputParameter attribute) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) stringify_dict (in module cwl_utils.graph_split) strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) SubstitutionError SubworkflowFeatureRequirement (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) SubworkflowFeatureRequirement_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) SubworkflowFeatureRequirementLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) successCodes (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) symbols (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.EnumSchema attribute) (cwl_utils.parser.cwl_v1_0.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.EnumSchema attribute) (cwl_utils.parser.cwl_v1_1.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.EnumSchema attribute) (cwl_utils.parser.cwl_v1_2.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema attribute)

T

t (class in cwl_utils.expression) temporaryFailCodes (cwl_utils.parser.cwl_v1_0.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_1.CommandLineTool attribute) (cwl_utils.parser.cwl_v1_2.CommandLineTool attribute) test_already_packed_graph() (in module cwl_utils.tests.test_packing) test_caches_js_processes() (in module cwl_utils.tests.test_js_sandbox) test_check_format() (in module cwl_utils.tests.test_format) test_check_format_equiv() (in module cwl_utils.tests.test_format) test_check_format_equiv2() (in module cwl_utils.tests.test_format) test_check_format_missing_file() (in module cwl_utils.tests.test_format) test_check_format_no_format() (in module cwl_utils.tests.test_format) test_check_format_no_ontology() (in module cwl_utils.tests.test_format) test_check_format_subformat() (in module cwl_utils.tests.test_format) test_check_format_wrong_format() (in module cwl_utils.tests.test_format) test_check_format_wrong_format_no_ontology() (in module cwl_utils.tests.test_format) test_cite_extract_simple() (in module cwl_utils.tests.test_cite_extract) test_cite_extract_workflow_no_results() (in module cwl_utils.tests.test_cite_extract) test_container_extraction() (in module cwl_utils.tests.test_docker_extract) test_container_extraction_embedded_step() (in module cwl_utils.tests.test_docker_extract) test_container_extraction_force() (in module cwl_utils.tests.test_docker_extract) test_container_extraction_no_dockerPull() (in module cwl_utils.tests.test_docker_extract) test_cuda_requirement_v1_0() (in module cwl_utils.tests.test_extensions) test_cuda_requirement_v1_1() (in module cwl_utils.tests.test_extensions) test_cuda_requirement_v1_2() (in module cwl_utils.tests.test_extensions) test_cwl_inputs_to_jsonschema() (in module cwl_utils.tests.test_inputs_schema_gen) test_cwl_inputs_to_jsonschema_fails() (in module cwl_utils.tests.test_inputs_schema_gen) test_cwl_version() (in module cwl_utils.tests.test_parser) test_embedded_packing() (in module cwl_utils.tests.test_packing) test_expression_refactor() (in module cwl_utils.tests.test_etools_to_clt) test_expression_refactor_noop() (in module cwl_utils.tests.test_etools_to_clt) test_expression_refactor_noop_solo() (in module cwl_utils.tests.test_etools_to_clt) test_get_default_id_from_graph() (in module cwl_utils.tests.test_parser) test_get_default_id_from_graph_without_main() (in module cwl_utils.tests.test_parser) test_get_id_from_graph() (in module cwl_utils.tests.test_parser) test_graph_load_all() (in module cwl_utils.tests.test_parser) test_graph_split() (in module cwl_utils.tests.test_graph_split) (in module cwl_utils.tests.test_meta) test_graph_split_bad_path() (in module cwl_utils.tests.test_graph_split) test_graph_split_complex1() (in module cwl_utils.tests.test_graph_split) test_graph_split_complex2() (in module cwl_utils.tests.test_graph_split) test_graph_split_json_offline() (in module cwl_utils.tests.test_graph_split) test_graph_split_offline() (in module cwl_utils.tests.test_graph_split) test_import_in_type() (in module cwl_utils.tests.test_packing) test_include() (in module cwl_utils.tests.test_packing) test_inplace_update_requirement_v1_0() (in module cwl_utils.tests.test_extensions) test_latest_parser() (in module cwl_utils.tests.test_parser) test_load_document() (in module cwl_utils.tests.test_parser) test_load_document_with_local_uri() (in module cwl_utils.tests.test_parser) test_load_document_with_remote_uri() (in module cwl_utils.tests.test_parser) test_load_example() (in module cwl_utils.tests.test_examples) test_load_listing_requirement_v1_0() (in module cwl_utils.tests.test_extensions) test_loading_format_without_schema_v1_0() (in module cwl_utils.tests.test_format) test_loading_options_graph_property_v1_0() (in module cwl_utils.tests.test_format) test_loading_options_graph_property_v1_1() (in module cwl_utils.tests.test_format) test_loading_options_graph_property_v1_2() (in module cwl_utils.tests.test_format) test_loading_options_missing_graph_v1_0() (in module cwl_utils.tests.test_format) test_loading_options_missing_graph_v1_1() (in module cwl_utils.tests.test_format) test_loading_options_missing_graph_v1_2() (in module cwl_utils.tests.test_format) test_loop_v1_2() (in module cwl_utils.tests.test_extensions) test_map_ordering_v1_0() (in module cwl_utils.tests.test_parser) test_map_ordering_v1_1() (in module cwl_utils.tests.test_parser) test_map_ordering_v1_2() (in module cwl_utils.tests.test_parser) test_mpi_requirement_v1_0() (in module cwl_utils.tests.test_extensions) test_mpi_requirement_v1_1() (in module cwl_utils.tests.test_extensions) test_mpi_requirement_v1_2() (in module cwl_utils.tests.test_extensions) test_network_access_v1_0() (in module cwl_utils.tests.test_extensions) test_node_version() (in module cwl_utils.tests.test_js_sandbox) TEST_PARAMS (in module cwl_utils.tests.test_inputs_schema_gen) test_port_normalization() (in module cwl_utils.tests.test_packing) test_process_generator_v1_0() (in module cwl_utils.tests.test_extensions) test_process_generator_v1_1() (in module cwl_utils.tests.test_extensions) test_process_generator_v1_2() (in module cwl_utils.tests.test_extensions) test_remote_packing() (in module cwl_utils.tests.test_packing) test_remote_packing_github_soft_links() (in module cwl_utils.tests.test_packing) test_resoled_path() (in module cwl_utils.tests.test_utils) test_save() (in module cwl_utils.tests.test_parser) test_schema_def1() (in module cwl_utils.tests.test_packing) test_schema_def2() (in module cwl_utils.tests.test_packing) test_secrets_v1_0() (in module cwl_utils.tests.test_extensions) test_secrets_v1_1() (in module cwl_utils.tests.test_extensions) test_secrets_v1_2() (in module cwl_utils.tests.test_extensions) test_shm_size_v1_0() (in module cwl_utils.tests.test_extensions) test_shm_size_v1_1() (in module cwl_utils.tests.test_extensions) test_shm_size_v1_2() (in module cwl_utils.tests.test_extensions) test_shortname() (in module cwl_utils.tests.test_parser) test_singularity_cache() (in module cwl_utils.tests.test_js_sandbox) test_static_checker_fail() (in module cwl_utils.tests.test_parser_utils) test_static_checker_success() (in module cwl_utils.tests.test_parser_utils) test_static_checker_warning() (in module cwl_utils.tests.test_parser_utils) test_step_packing() (in module cwl_utils.tests.test_packing) test_time_limit_v1_0() (in module cwl_utils.tests.test_extensions) TEST_v1_0_CWL (in module cwl_utils.tests.test_parser) TEST_v1_0_CWL_REMOTE (in module cwl_utils.tests.test_parser) test_v1_0_file_content_64_kB() (in module cwl_utils.tests.test_parser_utils) test_v1_0_file_content_larger_than_64_kB() (in module cwl_utils.tests.test_parser_utils) test_v1_0_stderr_to_file() (in module cwl_utils.tests.test_parser_utils) test_v1_0_stderr_to_file_preserve_original() (in module cwl_utils.tests.test_parser_utils) test_v1_0_stderr_to_file_with_binding() (in module cwl_utils.tests.test_parser_utils) test_v1_0_stdout_to_file() (in module cwl_utils.tests.test_parser_utils) test_v1_0_stdout_to_file_preserve_original() (in module cwl_utils.tests.test_parser_utils) test_v1_0_stdout_to_file_with_binding() (in module cwl_utils.tests.test_parser_utils) test_v1_0_step_valuefrom_expr_multisource() (in module cwl_utils.tests.test_etools_to_clt) test_v1_0_step_valuefrom_expr_sibling_inputs() (in module cwl_utils.tests.test_etools_to_clt) test_v1_0_type_compare_list() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_compare_record() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_output_source_with_flat_crossproduct_scatter_step() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_output_source_with_nested_crossproduct_scatter_step() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_output_source_with_single_scatter_step() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_source() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_source_with_id() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_source_with_multiple_entries_merge_flattened() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_source_with_multiple_entries_merge_nested() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_source_with_single_entry_merge_flattened() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_source_with_single_entry_merge_nested() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_for_stdout() (in module cwl_utils.tests.test_parser_utils) test_v1_0_type_output_source_record() (in module cwl_utils.tests.test_parser_utils) test_v1_0_workflow_top_level_format_expr() (in module cwl_utils.tests.test_etools_to_clt) test_v1_0_workflow_top_level_sf_expr() (in module cwl_utils.tests.test_etools_to_clt) test_v1_0_workflow_top_level_sf_expr_array() (in module cwl_utils.tests.test_etools_to_clt) test_v1_1_file_content_64_kB() (in module cwl_utils.tests.test_parser_utils) test_v1_1_file_content_larger_than_64_kB() (in module cwl_utils.tests.test_parser_utils) test_v1_1_stderr_to_file() (in module cwl_utils.tests.test_parser_utils) test_v1_1_stderr_to_file_preserve_original() (in module cwl_utils.tests.test_parser_utils) test_v1_1_stderr_to_file_with_binding() (in module cwl_utils.tests.test_parser_utils) test_v1_1_stdin_to_file() (in module cwl_utils.tests.test_parser_utils) test_v1_1_stdin_to_file_fail_with_original() (in module cwl_utils.tests.test_parser_utils) test_v1_1_stdin_to_file_with_binding() (in module cwl_utils.tests.test_parser_utils) test_v1_1_stdout_to_file() (in module cwl_utils.tests.test_parser_utils) test_v1_1_stdout_to_file_preserve_original() (in module cwl_utils.tests.test_parser_utils) test_v1_1_stdout_to_file_with_binding() (in module cwl_utils.tests.test_parser_utils) test_v1_1_step_valuefrom_expr_multisource() (in module cwl_utils.tests.test_etools_to_clt) test_v1_1_step_valuefrom_expr_sibling_inputs() (in module cwl_utils.tests.test_etools_to_clt) test_v1_1_type_compare_list() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_compare_record() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_output_source_with_flat_crossproduct_scatter_step() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_output_source_with_nested_crossproduct_scatter_step() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_output_source_with_single_scatter_step() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_source() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_source_with_id() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_source_with_multiple_entries_merge_flattened() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_source_with_multiple_entries_merge_nested() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_source_with_single_entry_merge_flattened() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_source_with_single_entry_merge_nested() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_for_stdout() (in module cwl_utils.tests.test_parser_utils) test_v1_1_type_output_source_record() (in module cwl_utils.tests.test_parser_utils) test_v1_1_workflow_top_level_format_expr() (in module cwl_utils.tests.test_etools_to_clt) test_v1_1_workflow_top_level_sf_expr() (in module cwl_utils.tests.test_etools_to_clt) test_v1_1_workflow_top_level_sf_expr_array() (in module cwl_utils.tests.test_etools_to_clt) TEST_v1_2_CWL (in module cwl_utils.tests.test_parser) test_v1_2_file_content_64_kB() (in module cwl_utils.tests.test_parser_utils) test_v1_2_file_content_larger_than_64_kB() (in module cwl_utils.tests.test_parser_utils) test_v1_2_stderr_to_file() (in module cwl_utils.tests.test_parser_utils) test_v1_2_stderr_to_file_preserve_original() (in module cwl_utils.tests.test_parser_utils) test_v1_2_stderr_to_file_with_binding() (in module cwl_utils.tests.test_parser_utils) test_v1_2_stdin_to_file() (in module cwl_utils.tests.test_parser_utils) test_v1_2_stdin_to_file_fail_with_original() (in module cwl_utils.tests.test_parser_utils) test_v1_2_stdin_to_file_with_binding() (in module cwl_utils.tests.test_parser_utils) test_v1_2_stdout_to_file() (in module cwl_utils.tests.test_parser_utils) test_v1_2_stdout_to_file_preserve_original() (in module cwl_utils.tests.test_parser_utils) test_v1_2_stdout_to_file_with_binding() (in module cwl_utils.tests.test_parser_utils) test_v1_2_step_valuefrom_expr_multisource() (in module cwl_utils.tests.test_etools_to_clt) test_v1_2_step_valuefrom_expr_sibling_inputs() (in module cwl_utils.tests.test_etools_to_clt) test_v1_2_type_compare_list() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_compare_record() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_output_source_with_flat_crossproduct_scatter_step() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_output_source_with_nested_crossproduct_scatter_step() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_output_source_with_single_scatter_step() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_id() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_multiple_entries_all_non_null() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_multiple_entries_first_non_null() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_multiple_entries_merge_flattened() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_multiple_entries_merge_nested() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_multiple_entries_the_only_non_null() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_single_entry_all_non_null() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_single_entry_first_non_null() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_single_entry_merge_flattened() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_single_entry_merge_nested() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_source_with_single_entry_the_only_non_null() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_for_stdout() (in module cwl_utils.tests.test_parser_utils) test_v1_2_type_output_source_record() (in module cwl_utils.tests.test_parser_utils) test_v1_2_workflow_output_pickvalue_expr() (in module cwl_utils.tests.test_etools_to_clt) test_v1_2_workflow_top_level_format_expr() (in module cwl_utils.tests.test_etools_to_clt) test_v1_2_workflow_top_level_sf_expr() (in module cwl_utils.tests.test_etools_to_clt) test_v1_2_workflow_top_level_sf_expr_array() (in module cwl_utils.tests.test_etools_to_clt) test_v_1_0_load_inputfile_with_format() (in module cwl_utils.tests.test_parser_utils) test_v_1_0_load_inputfile_with_nested_array() (in module cwl_utils.tests.test_parser_utils) test_v_1_0_load_inputfile_with_secondary_files() (in module cwl_utils.tests.test_parser_utils) test_v_1_1_load_inputfile_with_format() (in module cwl_utils.tests.test_parser_utils) test_v_1_1_load_inputfile_with_nested_array() (in module cwl_utils.tests.test_parser_utils) test_v_1_1_load_inputfile_with_requirements() (in module cwl_utils.tests.test_parser_utils) test_v_1_1_load_inputfile_with_secondary_files() (in module cwl_utils.tests.test_parser_utils) test_v_1_2_load_inputfile_with_format() (in module cwl_utils.tests.test_parser_utils) test_v_1_2_load_inputfile_with_nested_array() (in module cwl_utils.tests.test_parser_utils) test_v_1_2_load_inputfile_with_requirements() (in module cwl_utils.tests.test_parser_utils) test_v_1_2_load_inputfile_with_secondary_files() (in module cwl_utils.tests.test_parser_utils) test_value_from_two_concatenated_expressions() (in module cwl_utils.tests.test_js_sandbox) test_value_from_two_concatenated_expressions_podman() (in module cwl_utils.tests.test_js_sandbox)

test_value_from_two_concatenated_expressions_singularity() (in module cwl_utils.tests.test_js_sandbox) test_value_from_two_concatenated_expressions_udocker() (in module cwl_utils.tests.test_js_sandbox) test_work_reuse_v1_0() (in module cwl_utils.tests.test_extensions) test_workflow_step_process_scope_v1_0() (in module cwl_utils.tests.test_subscope) test_workflow_step_process_scope_v1_1() (in module cwl_utils.tests.test_subscope) test_workflow_step_process_scope_v1_2() (in module cwl_utils.tests.test_subscope) TimeLimit (class in cwl_utils.parser.cwl_v1_0) timelimit (cwl_utils.parser.cwl_v1_0.TimeLimit attribute) (cwl_utils.parser.cwl_v1_1.ToolTimeLimit attribute) (cwl_utils.parser.cwl_v1_2.ToolTimeLimit attribute) TimeLimitLoader (in module cwl_utils.parser.cwl_v1_0) tmpdir (cwl_utils.types.CWLRuntimeParameterContext attribute) tmpdirMax (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) tmpdirMin (cwl_utils.parser.cwl_v1_0.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_1.ResourceRequirement attribute) (cwl_utils.parser.cwl_v1_2.ResourceRequirement attribute) tmpdirSize (cwl_utils.types.CWLRuntimeParameterContext attribute) to_dict() (cwl_utils.inputs_schema_gen.JSONSchemaProperty method) to_pascal_case() (in module cwl_utils.utils) ToolTimeLimit (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) ToolTimeLimit_classLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) ToolTimeLimitLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) TOPLEVEL_FORMAT_EXPR_ERROR (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) TOPLEVEL_SF_EXPR_ERROR (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) traverse() (in module cwl_utils.cite_extract) (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) (in module cwl_utils.docker_extract) traverse_CommandLineTool() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) traverse_step() (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) traverse_workflow() (in module cwl_utils.cite_extract) (in module cwl_utils.cwl_v1_0_expression_refactor) (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) (in module cwl_utils.docker_extract) type_ (cwl_utils.inputs_schema_gen.JSONSchemaProperty attribute) (cwl_utils.parser.cwl_v1_0.ArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_0.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.CWLArraySchema attribute) (cwl_utils.parser.cwl_v1_0.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_0.CWLRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.EnumSchema attribute) (cwl_utils.parser.cwl_v1_0.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.InputParameter attribute) (cwl_utils.parser.cwl_v1_0.InputRecordField attribute) (cwl_utils.parser.cwl_v1_0.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.MapSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_0.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_0.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_0.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_0.RecordField attribute) (cwl_utils.parser.cwl_v1_0.RecordSchema attribute) (cwl_utils.parser.cwl_v1_0.UnionSchema attribute) (cwl_utils.parser.cwl_v1_0.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.ArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.CWLArraySchema attribute) (cwl_utils.parser.cwl_v1_1.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_1.CWLRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.EnumSchema attribute) (cwl_utils.parser.cwl_v1_1.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_1.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.InputRecordField attribute) (cwl_utils.parser.cwl_v1_1.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.MapSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_1.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_1.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_1.RecordField attribute) (cwl_utils.parser.cwl_v1_1.RecordSchema attribute) (cwl_utils.parser.cwl_v1_1.UnionSchema attribute) (cwl_utils.parser.cwl_v1_1.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_1.WorkflowOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.ArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandInputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandInputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.CommandOutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.CWLArraySchema attribute) (cwl_utils.parser.cwl_v1_2.CWLRecordField attribute) (cwl_utils.parser.cwl_v1_2.CWLRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.EnumSchema attribute) (cwl_utils.parser.cwl_v1_2.ExpressionToolOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.InputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.InputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.InputRecordField attribute) (cwl_utils.parser.cwl_v1_2.InputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.MapSchema attribute) (cwl_utils.parser.cwl_v1_2.OperationInputParameter attribute) (cwl_utils.parser.cwl_v1_2.OperationOutputParameter attribute) (cwl_utils.parser.cwl_v1_2.OutputArraySchema attribute) (cwl_utils.parser.cwl_v1_2.OutputEnumSchema attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordField attribute) (cwl_utils.parser.cwl_v1_2.OutputRecordSchema attribute) (cwl_utils.parser.cwl_v1_2.RecordField attribute) (cwl_utils.parser.cwl_v1_2.RecordSchema attribute) (cwl_utils.parser.cwl_v1_2.UnionSchema attribute) (cwl_utils.parser.cwl_v1_2.WorkflowInputParameter attribute) (cwl_utils.parser.cwl_v1_2.WorkflowOutputParameter attribute) type_dict (cwl_utils.inputs_schema_gen.JSONSchemaProperty attribute) type_for_source() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) (in module cwl_utils.parser.utils) type_for_step_input() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) (in module cwl_utils.parser.utils) type_for_step_output() (in module cwl_utils.parser.cwl_v1_0_utils) (in module cwl_utils.parser.cwl_v1_1_utils) (in module cwl_utils.parser.cwl_v1_2_utils) (in module cwl_utils.parser.utils) typedsl_Array_nameLoader_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_Enum_nameLoader_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_Map_nameLoader_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_Record_nameLoader_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_Union_nameLoader_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_union_of_CWLTypeLoader_or_stdinLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_union_of_CWLTypeLoader_or_stdoutLoader_or_stderrLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_union_of_None_type_or_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) typedsl_union_of_None_type_or_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) typedsl_union_of_None_type_or_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) typedsl_union_of_None_type_or_CWLTypeLoader_or_stdoutLoader_or_stderrLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) typedsl_union_of_PrimitiveTypeLoader_or_CWLRecordSchemaLoader_or_EnumSchemaLoader_or_CWLArraySchemaLoader_or_strtype_or_array_of_union_of_PrimitiveTypeLoader_or_CWLRecordSchemaLoader_or_EnumSchemaLoader_or_CWLArraySchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) typedsl_union_of_PrimitiveTypeLoader_or_RecordSchemaLoader_or_EnumSchemaLoader_or_ArraySchemaLoader_or_MapSchemaLoader_or_UnionSchemaLoader_or_strtype_or_array_of_union_of_PrimitiveTypeLoader_or_RecordSchemaLoader_or_EnumSchemaLoader_or_ArraySchemaLoader_or_MapSchemaLoader_or_UnionSchemaLoader_or_strtype_2 (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) types (cwl_utils.parser.cwl_v1_0.SchemaDefRequirement attribute) (cwl_utils.parser.cwl_v1_1.SchemaDefRequirement attribute) (cwl_utils.parser.cwl_v1_2.SchemaDefRequirement attribute)

U

Union_nameLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_array_of_union_of_FileLoader_or_DirectoryLoader_or_DirentLoader_or_strtype_or_ExpressionLoader_or_strtype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) union_of_array_of_union_of_None_type_or_FileLoader_or_array_of_union_of_FileLoader_or_DirectoryLoader_or_DirectoryLoader_or_DirentLoader_or_ExpressionLoader_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_1) union_of_array_of_union_of_strtype_or_WorkflowStepOutputLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_array_of_WorkflowStepLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_booltype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_booltype_or_strtype (in module cwl_utils.parser.cwl_v1_0) union_of_CommandInputParameterLoader_or_WorkflowInputParameterLoader (in module cwl_utils.parser.cwl_v1_1) union_of_CommandInputParameterLoader_or_WorkflowInputParameterLoader_or_OperationInputParameterLoader (in module cwl_utils.parser.cwl_v1_2) union_of_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_OperationLoader_or_ProcessGeneratorLoader (in module cwl_utils.parser.cwl_v1_2) union_of_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_OperationLoader_or_ProcessGeneratorLoader_or_array_of_union_of_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_OperationLoader_or_ProcessGeneratorLoader (in module cwl_utils.parser.cwl_v1_2) union_of_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_ProcessGeneratorLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) union_of_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_ProcessGeneratorLoader_or_array_of_union_of_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_ProcessGeneratorLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) union_of_CommandOutputParameterLoader_or_ExpressionToolOutputParameterLoader_or_WorkflowOutputParameterLoader (in module cwl_utils.parser.cwl_v1_1) union_of_CommandOutputParameterLoader_or_ExpressionToolOutputParameterLoader_or_WorkflowOutputParameterLoader_or_OperationOutputParameterLoader (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_stdinLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_CWLTypeLoader_or_stdoutLoader_or_stderrLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_ExpressionLoader_or_array_of_union_of_None_type_or_DirentLoader_or_ExpressionLoader_or_FileLoader_or_DirectoryLoader_or_array_of_union_of_FileLoader_or_DirectoryLoader (in module cwl_utils.parser.cwl_v1_2) union_of_FileLoader_or_DirectoryLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_FileLoader_or_DirectoryLoader_or_DirentLoader_or_strtype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_LoadListingRequirementLoader_or_InplaceUpdateRequirementLoader_or_SecretsLoader_or_TimeLimitLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_0) union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_LoadListingRequirementLoader_or_InplaceUpdateRequirementLoader_or_SecretsLoader_or_TimeLimitLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_0) union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_2) union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_2) union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_1) union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_1) union_of_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader (in module cwl_utils.parser.cwl_v1_0) union_of_inttype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_inttype_or_strtype (in module cwl_utils.parser.cwl_v1_0) union_of_LoadListingEnumLoader (in module cwl_utils.parser.cwl_v1_0) union_of_None_type_or_Any_type (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_Any_type (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_CommandInputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_CommandOutputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_CWLRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_InputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_inttype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_OutputRecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_RecordFieldLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_union_of_FileLoader_or_DirectoryLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_LoadListingRequirementLoader_or_InplaceUpdateRequirementLoader_or_SecretsLoader_or_TimeLimitLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_0) union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_LoadListingRequirementLoader_or_InplaceUpdateRequirementLoader_or_SecretsLoader_or_TimeLimitLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_0) union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_LoopLoader_or_ShmSizeLoader_or_CWLObjectTypeLoader (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader (in module cwl_utils.parser.cwl_v1_1) union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_Any_type (in module cwl_utils.parser.cwl_v1_1) union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_LoadListingRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_WorkReuseLoader_or_NetworkAccessLoader_or_InplaceUpdateRequirementLoader_or_ToolTimeLimitLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_SecretsLoader_or_MPIRequirementLoader_or_CUDARequirementLoader_or_ShmSizeLoader_or_CWLObjectTypeLoader (in module cwl_utils.parser.cwl_v1_1) union_of_None_type_or_array_of_union_of_strtype_or_ExpressionLoader_or_CommandLineBindingLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_booltype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_booltype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_CommandLineBindingLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_CommandOutputBindingLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_CWLObjectTypeLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) union_of_None_type_or_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) union_of_None_type_or_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) union_of_None_type_or_CWLTypeLoader_or_stdoutLoader_or_stderrLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) union_of_None_type_or_CWLVersionLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_DirentLoader_or_ExpressionLoader_or_FileLoader_or_DirectoryLoader_or_array_of_union_of_FileLoader_or_DirectoryLoader (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_FileLoader_or_array_of_union_of_FileLoader_or_DirectoryLoader_or_DirectoryLoader_or_DirentLoader_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_1) union_of_None_type_or_InputBindingLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_inttype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_inttype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_inttype_or_floattype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_inttype_or_strtype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) union_of_None_type_or_LinkMergeMethodLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_LoadListingEnumLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_PickValueMethodLoader (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_ScatterMethodLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_SecondaryFileSchemaLoader_or_array_of_SecondaryFileSchemaLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_strtype_or_array_of_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_strtype_or_array_of_strtype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_strtype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2)

union_of_None_type_or_strtype_or_ExpressionLoader_or_array_of_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_None_type_or_strtype_or_ExpressionLoader_or_array_of_union_of_strtype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) union_of_PrimitiveTypeLoader_or_CWLRecordSchemaLoader_or_EnumSchemaLoader_or_CWLArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_PrimitiveTypeLoader_or_CWLRecordSchemaLoader_or_EnumSchemaLoader_or_CWLArraySchemaLoader_or_strtype_or_array_of_union_of_PrimitiveTypeLoader_or_CWLRecordSchemaLoader_or_EnumSchemaLoader_or_CWLArraySchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_PrimitiveTypeLoader_or_RecordSchemaLoader_or_EnumSchemaLoader_or_ArraySchemaLoader_or_MapSchemaLoader_or_UnionSchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_PrimitiveTypeLoader_or_RecordSchemaLoader_or_EnumSchemaLoader_or_ArraySchemaLoader_or_MapSchemaLoader_or_UnionSchemaLoader_or_strtype_or_array_of_union_of_PrimitiveTypeLoader_or_RecordSchemaLoader_or_EnumSchemaLoader_or_ArraySchemaLoader_or_MapSchemaLoader_or_UnionSchemaLoader_or_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_strtype_or_array_of_strtype (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_strtype_or_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_OperationLoader_or_ProcessGeneratorLoader (in module cwl_utils.parser.cwl_v1_2) union_of_strtype_or_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_ProcessGeneratorLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) union_of_strtype_or_ExpressionLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_strtype_or_ExpressionLoader_or_CommandLineBindingLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) union_of_strtype_or_WorkflowStepOutputLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) UnionSchema (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) UnionSchemaLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) URI (in module cwl_utils.tests.test_graph_split) uri_array_of_strtype_False_False_0_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_array_of_strtype_True_False_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_CommandLineTool_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_Directory_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_DockerRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_EnvVarRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_ExpressionTool_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_File_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_InitialWorkDirRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_InlineJavascriptRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_InplaceUpdateRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_LoadListingRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_MultipleInputFeatureRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_NetworkAccess_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_Operation_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_2) uri_ResourceRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_ScatterFeatureRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_SchemaDefRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_ShellCommandRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_SoftwareRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_StepInputExpressionRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_strtype_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_strtype_True_False_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_SubworkflowFeatureRequirement_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_ToolTimeLimit_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_array_of_union_of_strtype_or_WorkflowStepOutputLoader_True_False_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandInputRecordSchemaLoader_or_CommandInputEnumSchemaLoader_or_CommandInputArraySchemaLoader_or_strtype_False_True_2_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_CommandOutputRecordSchemaLoader_or_CommandOutputEnumSchemaLoader_or_CommandOutputArraySchemaLoader_or_strtype_False_True_2_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_InputRecordSchemaLoader_or_InputEnumSchemaLoader_or_InputArraySchemaLoader_or_strtype_False_True_2_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype_or_array_of_union_of_CWLTypeLoader_or_OutputRecordSchemaLoader_or_OutputEnumSchemaLoader_or_OutputArraySchemaLoader_or_strtype_False_True_2_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_array_of_strtype_False_False_None_True (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_array_of_strtype_True_False_None_None (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_CWLVersionLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_ScatterMethodLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_strtype_False_False_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_strtype_or_array_of_strtype_False_False_0_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_strtype_or_array_of_strtype_False_False_1_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_strtype_or_array_of_strtype_False_False_2_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_strtype_or_array_of_strtype_or_ExpressionLoader_True_False_None_True (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_strtype_or_ExpressionLoader_True_False_None_True (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_strtype_True_False_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_None_type_or_strtype_True_False_None_True (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_PrimitiveTypeLoader_or_CWLRecordSchemaLoader_or_EnumSchemaLoader_or_CWLArraySchemaLoader_or_strtype_or_array_of_union_of_PrimitiveTypeLoader_or_CWLRecordSchemaLoader_or_EnumSchemaLoader_or_CWLArraySchemaLoader_or_strtype_False_True_2_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_PrimitiveTypeLoader_or_RecordSchemaLoader_or_EnumSchemaLoader_or_ArraySchemaLoader_or_MapSchemaLoader_or_UnionSchemaLoader_or_strtype_or_array_of_union_of_PrimitiveTypeLoader_or_RecordSchemaLoader_or_EnumSchemaLoader_or_ArraySchemaLoader_or_MapSchemaLoader_or_UnionSchemaLoader_or_strtype_False_True_2_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_union_of_strtype_or_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_OperationLoader_or_ProcessGeneratorLoader_False_False_None_None (in module cwl_utils.parser.cwl_v1_2) uri_union_of_strtype_or_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader_or_ProcessGeneratorLoader_False_False_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) uri_Workflow_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) uri_WorkReuse_classLoader_False_True_None_None (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2)

V

valueFrom (cwl_utils.parser.cwl_v1_0.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_0.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_1.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_1.WorkflowStepInput attribute) (cwl_utils.parser.cwl_v1_2.CommandLineBinding attribute) (cwl_utils.parser.cwl_v1_2.LoopInput attribute) (cwl_utils.parser.cwl_v1_2.WorkflowStepInput attribute) values (cwl_utils.parser.cwl_v1_0.MapSchema attribute) (cwl_utils.parser.cwl_v1_1.MapSchema attribute) (cwl_utils.parser.cwl_v1_2.MapSchema attribute)

version (cwl_utils.parser.cwl_v1_0.SoftwarePackage attribute) (cwl_utils.parser.cwl_v1_1.SoftwarePackage attribute) (cwl_utils.parser.cwl_v1_2.SoftwarePackage attribute) version_split() (in module cwl_utils.parser) vocab (cwl_utils.parser.cwl_v1_0.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_1.LoadingOptions attribute) (cwl_utils.parser.cwl_v1_2.LoadingOptions attribute)

W

when (cwl_utils.parser.cwl_v1_2.WorkflowStep attribute) Workflow (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) Workflow_classLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) workflow_step_to_InputParameters() (in module cwl_utils.cwl_v1_0_expression_refactor) workflow_step_to_WorkflowInputParameters() (in module cwl_utils.cwl_v1_1_expression_refactor) (in module cwl_utils.cwl_v1_2_expression_refactor) WorkflowException WorkflowInputParameter (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) WorkflowInputParameterLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) WorkflowLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) WorkflowOutputParameter (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) WorkflowOutputParameterLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) WorkflowStep (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser)

WorkflowStepInput (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) WorkflowStepInputLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) WorkflowStepLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) WorkflowStepOutput (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) (in module cwl_utils.parser) WorkflowStepOutputLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) WorkflowTypes (in module cwl_utils.parser) WorkReuse (class in cwl_utils.parser.cwl_v1_0) (class in cwl_utils.parser.cwl_v1_1) (class in cwl_utils.parser.cwl_v1_2) WorkReuse_classLoader (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) WorkReuseLoader (in module cwl_utils.parser.cwl_v1_0) (in module cwl_utils.parser.cwl_v1_1) (in module cwl_utils.parser.cwl_v1_2) writable (cwl_utils.parser.cwl_v1_0.Dirent attribute) (cwl_utils.parser.cwl_v1_1.Dirent attribute) (cwl_utils.parser.cwl_v1_2.Dirent attribute) (cwl_utils.types.DirentType attribute)

Y

yaml (in module cwl_utils.tests.test_parser)

yaml_dump() (in module cwl_utils.graph_split) yaml_dumps() (in module cwl_utils.utils)