Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: pyensembl
Upstream-Contact: Alex Rubinsteyn <alex.rubinsteyn@unc.edu>
Source: https://github.com/openvax/pyensembl

Files: *
Copyright: 2015-2025 Mount Sinai School of Medicine
License: Apache-2.0

Files: tests/data/gencode.ucsc.small.gtf
Copyright:
 2025 EBI
License: EMBL
 General
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 EMBL’s European Bioinformatics Institute (EMBL-EBI) promotes open
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 EMBL-EBI expects attribution (e.g. in publications, services or products)
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  EMBL’s European Bioinformatics Institute (EMBL-EBI)
  Wellcome Genome Campus
  Hinxton CB10 1SD
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 Data
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 The Data Resources and Tools hosted by EMBL-EBI are generated in part
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 other than those provided by the original data owners, unless otherwise
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 The original data may be subject to rights claimed by third parties,
 including but not limited to, patent, copyright, other intellectual
 property rights, biodiversity-related access and benefit-sharing
 rights. For the specific case of the EGA database and human data
 consented for biomedical research, these rights may be formalised in
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 Data Resources and Tools to ensure that their exploitation of the data
 does not infringe any of the rights of such third parties.
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 Privacy
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 EMBL is an intergovernmental organisation, entrusted with a number of
 privileges and immunities necessary to fulfil its mission, including the
 inviolability of EMBL premises and archives. Within these limits, the
 user is granted certain rights in relation to its personal data. These
 are detailed in our Internal Policy on Data Protection.
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 More details of the personal data we collect from users when the website
 is browsed and how EMBL processes this personal data are detailed in
 our our Privacy notice.
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 EMBL-EBI’s websites use cookies to record information about user online
 preferences that allow EMBL-EBI to personalise users’ experience of
 the website. Users can control the use of cookies from the web browser,
 but if the user chooses not to accept cookies from EMBL-EBI’s websites,
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Comment:
 This information is gathered from
 https://www.gencodegenes.org/human/releases.html
 pointing to the EBI's data usage policies on
 https://www.ebi.ac.uk/about/terms-of-use/.


Files: tests/data/mouse.ensembl.81.partial.ENSMUSG00000017167.pep
       tests/data/mouse.ensembl.81.partial.ENSMUSG00000017167.fa
       tests/data/mouse.ensembl.81.partial.ncrna.ENSMUSG00000017167.fa
       tests/data/mouse.ensembl.81.partial.ENSMUSG00000017167.gtf
Copyright:
 2001-2025 EMBL-EBI, Hinxton, UK
License: Unrestricted
 Ensembl imposes no restrictions on access to, or use of, the data provided and the software used to analyse and present it. Ensembl data generated by members of the project are available without restriction.
 .
 From https://www.ensembl.org/info/about/legal/disclaimer.html.

Files: tests/data/refseq.ucsc.small.gtf
Copyright:
 1996-2025 NCBI
License: NCBI
 .
 Molecular Data Usage
 .
 Databases of molecular data on the NCBI Web site include such examples
 as nucleotide sequences (GenBank), protein sequences, macromolecular
 structures, molecular variation, gene expression, and mapping data. They
 are designed to provide and encourage access within the scientific
 community to sources of current and comprehensive information. Therefore,
 NCBI itself places no restrictions on the use or distribution of
 the data contained therein. Nor do we accept data when the submitter
 has requested restrictions on reuse or redistribution. However, some
 submitters of the original data (or the country of origin of such data)
 may claim patent, copyright, or other intellectual property rights in
 all or a portion of the data (that has been submitted). NCBI is not in
 a position to assess the validity of such claims and since there is
 no transfer of rights from submitters to NCBI, NCBI has no rights to
 transfer to a third party. Therefore, NCBI cannot provide comment or
 unrestricted permission concerning the use, copying, or distribution
 of the information contained in the molecular databases.
 .
 From https://www.ncbi.nlm.nih.gov/home/about/policies/

Files: debian/*
Copyright: 2021,2025 Steffen Moeller <moeller@debian.org>
           2022 Étienne Mollier <emollier@debian.org>
           2023 Lance Lin <lq27267@gmail.com>
License: Apache-2.0

License: Apache-2.0
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.
 You may obtain a copy of the License at
 .
     http://www.apache.org/licenses/LICENSE-2.0
 .
 Unless required by applicable law or agreed to in writing, software
 distributed under the License is distributed on an "AS IS" BASIS,
 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 See the License for the specific language governing permissions and
 limitations under the License.
 .
 On Debian systems this license is available at
 '/usr/share/common-licenses/Apache-2.0'
